Table 4 Oligonucleotide Primers used in this Study.

From: Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut

Purpose

Primer

Sequencea

Construction of UCC2003 nagA1 deletion

nagA1SOE A

catctggtgctgctcgctttcg

nagA1SOE B

agtgagcagcacgtcggcggccgccacatcgatgccatccg

nagA1SOE C

cggatggcatcgatgtggcggccgccgacgtgctgctcac

nagA1SOE D

ctcaaggctgcgatcgacatg

nagA1SOE E

cgctcactgcagcacccgcacgccacgatcatc

nagA1SOE F

atctccctgcagctcaaggctgcgatcgacatg

Construction of UCC2003 nagA2 deletion

nagA2SOE A

gcatccgcacgccacgattatc

nagA2SOE B

caccaaacctgttcgaccgtccaatagccaggagtcaggattcg

nagA2SOE C

cgaatcctgactcctggctattggacggtcgaacaggtttggtg

nagA2SOE D

gatctacggcatcaatgagc

nagA2SOE E

aactgcctgcagcgctacgcatacacccacaag

nagA2SOE F

atctccctgcagatcattcgttcctgtgcgctttg

pBS423 multiple cloning site primers

pBSF

cgttacgttattagttat

pBSR

gtaatacgttcgtgtcgcg

Amplification of spectinomycin resistance cassette

specFw

gtcgtcgtatctgaacc

specRv

gataactacgaactgctaac

  1. aRestriction sites incorporated into oligonucleotide primer sequences are indicated in bold.