Table 1 Gene Expression Omnibus (GEO) expression data used to construct StaphNet.
GSE | Platform | Description | # gene | # link |
|---|---|---|---|---|
GSE26249 | GPL10597 | Gene expression analysis of daptomycin resistance in Staphylococcus aureus strains: 2818 and 2819 | 859 | 22,485 |
GSE10605 | GPL1339 | Microarray analysis of toxicogenomic effects of ortho-phenylphenol on S. aureus | 882 | 19,510 |
GSE13424 | GPL1339 | Profiling downregulation of the mevalonate pathway in S. aureus | 1,349 | 30,499 |
GSE14669 | GPL1339 | Transcriptional analysis of S. aureus response to ramoplanin | 581 | 22,515 |
GSE15394 | GPL1339 | S. aureus treated with fosfomycin | 945 | 23,492 |
GSE22233 | GPL1339 | Expression and mRNA half-life data for acid- and alkaline-shocked S. aureus | 1,666 | 35,508 |
GSE3415 | GPL1339 | Global transcriptome analysis of S. aureus response to hydrogen peroxide | 1,802 | 48,499 |
GSE39627 | GPL1339 | Comparison of the oxacillin stress response in vraS and vraT mutants | 2,066 | 30,501 |
GSE40448 | GPL1339 | Microarray analysis of toxicogenomic effect of ortho-benzyl-para-chlorophenol (OBPCP) on S. aureus | 1,913 | 58,496 |
GSE40450 | GPL1339 | Comparative analysis of the toxicogenomic effects of ortho-benzyl-para-chlorophenol (OBPCP) and para-tertiary amylphenol (PTAP) on S. aureus | 1,580 | 45,490 |
GSE50675 | GPL1339 | Global transcriptome analysis of S. aureus biofilms in response to innate immune cells | 798 | 22,495 |
GSE58938 | GPL1339 | Phenotype and expression profile analysis of S. aureus biofilms and planktonic cells in response to licochalcone A | 904 | 14,504 |
GSE20973 | GPL1339 | Direct targets of CodY in S. aureus | 980 | 17,494 |
GSE70040 | GPL20586 | Whole-transcriptome analysis of S. aureus under laboratory and infection-mimicking conditions | 480 | 11,418 |
GSE25454 | GPL8069 | Global changes in S. aureus gene expression in human blood provide insight into mechanisms of immune evasion and virulence | 1,863 | 44,494 |
GSE65827 | GPL18484 | SaeRS-dependent inhibition of biofilm formation in S. aureus Newman | 249 | 9,507 |
GSE59851 | GPL19006 | Potential influence of S. aureus clonal complex 30 genotype and transcriptome on hematogenous infections | 1,592 | 45,497 |
GSE68772 | GPL19006 | The C-terminal region of the RNA helicase CshA is required for the interaction with the degradosome and turnover of bulk RNA in the opportunistic pathogen S. aureus | 1,687 | 18,506 |
