Table 1 Expression of C. quitensis genes involved in phenylpropanoid biosynthesis pathway.

From: Comparative transcriptome analysis of field- and chamber-grown samples of Colobanthus quitensis (Kunth) Bartl, an Antarctic flowering plant

Contig ID

Arabidopsis ortholog

Genes*

EC

FPKM

p-value

LAB

ANT

Contig20542

AT2G37040

PAL1

EC:4.3.1.24

26.7

131.3

1.6 × 10−13

Contig20541

AT2G37040

PAL1

EC:4.3.1.24

8.5

31.7

4.2 × 10−4

Contig49114

AT2G30490

C4H

EC:1.14.13.11

2.4

15.8

1.7 × 10−3

Contig70533

AT2G30490

C4H

EC:1.14.13.11

1.9

18.9

2.4 × 10−4

Contig22559

AT2G40890

CYP98A3

EC:1.14.13.36

17.6

48.4

6.3 × 10−4

Contig24607

AT2G40890

CYP98A3

EC:1.14.13.36

16.6

49.2

2.4 × 10−4

Contig33804

AT1G80820

CCR2

EC:1.2.1.44

73.4

229.9

4.4 × 10−13

Contig7537

AT1G67980

CCoAMT

EC:2.1.1.104

39.7

141.8

1.1 × 10−10

Contig16972

AT4G34050

CCoAOMT1

EC:2.1.1.104

118.7

424.2

0

Contig28757

AT5G54160

OMT1

EC:2.1.1.68

854.4

1773.0

0

Contig40563

AT5G48930

HCT

EC:2.3.1.133

12.2

42.2

1.4 × 10−4

Contig29449

AT5G48930

HCT

EC:2.3.1.133

22.7

80.4

3.8 × 10−7

Contig13431

AT5G48930

HCT

EC:2.3.1.133

15.1

76.2

3.9 × 10−9

Contig24021

AT1G72680

CAD1

EC:1.1.1.195

94.1

345.6

0

Contig25236

AT4G37990

CAD8

EC:1.1.1.195

24.5

88.0

1.3 × 10−7

Contig3499

AT1G62940

4CL

EC:6.2.1.12

3.2

49.5

9.6 × 10−10

Contig24005

AT1G68850

PRX

EC:1.11.1.7

9.5

40.8

2.7 × 10−5

Contig21838

AT1G71695

PRX

EC:1.11.1.7

46.1

179.7

2.7 × 10−14

Contig28685

AT2G38380

PRX

EC:1.11.1.7

11.7

46.6

1.7 × 10−5

Contig68730

AT4G21960

PRX

EC:1.11.1.7

46.2

120.3

5.0 × 10−6

Contig24815

AT4G21960

PRX

EC:1.11.1.7

212.8

377.8

1.3 × 10−5

Contig16077

AT4G37520

PRX

EC:1.11.1.7

1.2

24.1

9.2 × 10−6

Contig18878

AT5G05340

PRX

EC:1.11.1.7

9.3

52.3

2.0 × 10−7

Contig86217

AT5G05340

PRX

EC:1.11.1.7

13.9

73.4

3.7 × 10−9

Contig66598

AT5G05340

PRX

EC:1.11.1.7

33.2

92.9

8.6 × 10−6

Contig59359

AT5G22410

PRX

EC:1.11.1.7

175.6

319.5

3.4 × 10−5

Contig31962

AT5G66390

PRX

EC:1.11.1.7

9.4

105.6

0

Contig33299

AT5G66390

PRX

EC:1.11.1.7

11.1

101.3

1.8 × 10−15

Contig2685

AT5G13930

CHS

EC:2.3.1.74

8.7

67.7

0

Contig16136

AT3G55120

CHI

EC:5.5.1.6

36.8

80.0

0

  1. PAL: phenylalanine ammonia lyase; C4H: cinnamic acid 4-hydroxylase; 4CL: 4-hydroxycinnamoyl-CoA ligase; CYP98A3: Cytochrome P450 98A3 (Coumaroyl shikimate 3′-monooxygenase); HCT: hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase; C3H: p-coumaroyl shikimate 3′-hydroxylase; CCoAOMT: caffeoyl-CoA O-methyltransferase; CCR: hydroxycinnamoyl-CoA reductase; F5H: ferulic acid 5-hydroxylase; COMT: caffeic acid/5-hydroxyferulic acid O-methyltransferase; CAD: cinnamyl alcohol dehydrogenase; PRX: peroxidase; CHS: chalcone synthase; CHI: chalcone isomerase.
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