Table 1 Cotton rat transcriptome assembly and annotation.
From: Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection
Transcriptome assembly | |
|---|---|
Total trinity transcripts | 771,188 |
Total trinity transcripts (FPKM > 1) | 135,805 |
Percent GC | 43.22 |
Contig N50 | 657 |
Median contig length | 365 bp |
Average contig length | 575.08 bp |
Total assembled bases | 443,491,781 bp |
Annotation | |
Functionally annotated transcripts | 38,736 |
Unique genes (UniProt) | 12,211 |
