Table 2 Structural features of the different lipases variants in aqueous conditions.

From: Insight into the molecular mechanism behind PEG-mediated stabilization of biofluid lipases

Enzyme

T a(K)

RMSD (nm)

Radius of Gyration (nm)

Secondary Structure (# of Residues)

SASA (nm)

SCb

Main chain + H

RML

298

0.15 ± 0.03

1.71 ± 0.01

176 ± 5

100 ± 1

16.6 ± 0.2

348

0.26 ± 0.01

1.71 ± 0.01

172 ± 4

100 ± 1

17.0 ± 0.1

368

0.29 ± 0.03

1.72 ± 0.01

167 ± 3

100 ± 1

17.3 ± 0.1

cRML60

298

0.14 ± 0.02

1.70 ± 0.01

182 ± 8

121 ± 7

14.5 ± 2.2

348

0.22 ± 0.01

1.71 ± 0.01

172 ± 3

121 ± 6

15.2 ± 2.3

368

0.27 ± 0.03

1.72 ± 0.01

170 ± 2

122 ± 7

15.2 ± 2.3

cRML60-S2

298

0.15 ± 0.02

1.72 ± 0.01

176 ± 2

121 ± 4

14.4 ± 0.7

348

0.20 ± 0.02

1.73 ± 0.02

174 ± 7

126 ± 4

15.1 ± 1.1

368

0.25 ± 0.03

1.74 ± 0.01

169 ± 2

128 ± 2

15.9 ± 0.6

cRML60-S7

298

0.12 ± 0.01

1.70 ± 0.01

183 ± 1

123 ± 1

14.0 ± 0.5

348

0.21 ± 0.01

1.72 ± 0.01

173 ± 3

126 ± 1

15.3 ± 1.4

368

0.21 ± 0.01

1.72 ± 0.01

174 ± 6

126 ± 3

15.5 ± 2.8

  1. The results presented are the average of three replicates from the last 100 ns of 500 ns of MD simulations.
  2. aT = Temperature; bSC = side chain.