Table 1 Mma strains source, apparent derivation that was employed in this study.
From: Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing
Strains | Host | Isolated from | Accession no | Comments | Reference |
|---|---|---|---|---|---|
CCUG20998 | Salt water fish | Philadelphia, USA | CP024190 | Derivative of the Mma Aronson isolate. Strain collection passage variant. | Strain collection, Gothenborg, Sweden |
BB170200 | Silver perch (Bidyanus bidyanus) | Israel, freshwater, cultured | PEDI00000000 | ref.63 | |
DL240490 | European sea bass (Dicentrarchus labrax) | Israel, marine (RS), cultured | PEDJ00000000 | ref.63 | |
NCTC2275 | Salt water fish | PEDD00000000 | Derivative of the Mma Aronson isolate. Strain collection passage variant. | Dr B. Herrmann, Uppsala Academic Hospital, Sweden | |
MSS4 | Human skin lesions infection during outbreak in an aquaculture facility | Mississippi, USA | PEDG00000000 | Clinical isolate. | ref.44 |
MSS2 | Hybrid striped bass outbreak in an aquaculture facility | Mississippi, USA | PEDH00000000 | Clinical isolate. | ref.44 |
Davis-1 | Farmed striped bass | Davis California, USA | PEDF00000000 | Clinical isolate. | ref.44 |
VIMS9 | Striped bass in the wild | Virginia, USA | PECY000000 | Clinical isolate. | ref.44 |
KST-214 | Hybrid striped bass, an outbreak at Kent Sea Tech aquaculture facility | Central Valley of California, USA | PEDE00000000 | Clinical isolate. | ref.44 |
DSM44344 | Salt water fish | Philadelphia, USA | PEDC00000000 | Derivative of the Mma Aronson isolate. Strain collection passage variant. | DSMZ strain collection |
DSM43518 | Salt water fish | Philadelphia, USA | PEDA00000000 | Derivative of the Mma Aronson isolate. Strain collection passage variant. | DSMZ strain collection |
DSM43519 | Salt water fish | Philadelphia, USA | PEDB00000000 | Derivative of the Mma Aronson isolate. Strain collection passage variant. | DSMZ strain collection |
1218R | Salt water fish | Philadelphia, USA | CP025779 | Derivative of Mma Aronson, TMC 1218, rough colony morphology variant (1218R). | Trudeau Mycobacterial Collection (TMC), ref.64 |
DE4381 | Salt water fish | Philadelphia, USA | PECZ00000000 | Derivatives of TMC 1218 smooth colony morphology variant (1218S). | P. L. Small, L. P. Barker and D. G. Ennis |
DE4576/Huestis | Zebrafish (Danio rerio), outbreak of the ZIRC National zebrafish facility | Oregon, USA | PEDK00000000 | Clinical isolate (“Heustis”). | K. Guillemin and D. G. Ennis |
M | Human patient | San Francisco, USA | GCA_000018345.1 | ref.6 | |
E11 | European sea bass (Dicentrarchus labrax) | Israel | GCA_000723425.2 | ||
MB2 | Fish | Thailand | GCA_000419335.1 | ref.66 | |
Europe | Fish | Europe | GCA_000419315.1 | ref.66 | |
