Figure 2
From: mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii
Genomic location and secondary structure prediction of selected intergenic rancRNA candidates. (A,B,C) Genome browser views of the locations of the rancRNA candidates s194, IG1.7 and Hts4 in the H. volcanii genome. In green the coverage of the sequencing results are shown. Thin vertical red lines indicate the borders of the predicted processing products by the APART pipeline. The orange bars show the respective lengths of rancRNA candidates as determined by 3′-RACE. Blue boxes indicate intergenic regions of the H. volcanii genome whereas up- and downstream ORFs are indicated by black, rose and grey boxes, respectively, with arrows indicating the orientation of the genes. (D) Secondary structure predictions by Mfold of rancRNA candidates s194, IG1.7 and Hts4 are shown. The residues highlighted in purple in s194 are complementary to the putative mRNA target cstA.
