Table 1 SNPs in C2 distributed in different functional groups according to TubercuList.

From: A Major Mycobacterium tuberculosis outbreak caused by one specific genotype in a low-incidence country: Exploring gene profile virulence explanations

Functional group

C2 SNPs

TubercuList

% of genes we found SNPs

Expecteda

Expected # of SNPsb

Information pathways

16

242

6,61

0,06

14,66

Cell wall and cell processes

58

772

7,51

0,20

46,76

Intermediary metabolism and respiration

52

936

5,56

0,24

56,70

Virulence, detoxification, adaptation

11

239

4,60

0,06

14,48

Conserved hypotheticals

51

1042

4,89

0,27

63,12

Regulatory proteins

11

198

5,56

0,05

11,99

Lipid metabolism

32

272

11,76

0,07

16,48

Insertion seqs and phages

2

147

1,36

0,04

8,90

Unknown

1

15

6,67

0,00

0,91

  1. aNumber of genes in that category divided by number of genes in total, all according to TubercuList.
  2. bExpected times total number of SNPs in C2.
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