Table 2 The 52 differentially expressed genes in HIV lung cancer.

From: Molecular Changes of Lung Malignancy in HIV Infection

Probeset ID

Gene Symbol

Gene Title

p-value

Fold-Change

FDR

204304_s_at

PROM1

prominin 1

0.000

41.78

0.026

204653_at

TFAP2A

transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)

0.003

32.14

0.104

228347_at

SIX1

SIX homeobox 1

0.007

16.34

0.135

202936_s_at

SOX9

SRY (sex determining region Y)-box 9

0.009

12.46

0.145

202935_s_at

SOX9

SRY (sex determining region Y)-box 9

0.006

11.77

0.125

1568574_x_at

SPP1

secreted phosphoprotein 1

0.004

9.89

0.108

214774_x_at

TOX3

TOX high mobility group box family member 3

0.012

9.37

0.159

240303_at

TMC5

transmembrane channel-like 5

0.003

8.83

0.102

201291_s_at

TOP2A

topoisomerase (DNA) II alpha 170 kDa

0.010

8.81

0.150

223748_at

SLC4A11

solute carrier family 4, sodium borate transporter, member 11

0.012

8.67

0.162

205286_at

TFAP2C

transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)

0.002

7.75

0.090

1552797_s_at

PROM2

prominin 2

0.002

7.70

0.089

228038_at

SOX2

SRY (sex determining region Y)-box 2

0.002

7.34

0.093

215108_x_at

TOX3

TOX high mobility group box family member 3

0.025

7.08

0.204

219787_s_at

ECT2

epithelial cell transforming 2

0.002

6.91

0.089

238689_at

GPR110

G protein-coupled receptor 110

0.030

6.89

0.216

215071_s_at

HIST1H2AC

histone cluster 1, H2ac

0.014

6.77

0.168

205817_at

SIX1

SIX homeobox 1

0.000

6.76

0.053

201417_at

SOX4

SRY (sex determining region Y)-box 4

0.002

6.62

0.093

203744_at

HMGB3

high mobility group box 3

0.002

6.28

0.093

230660_at

SERTAD4

SERTA domain containing 4

0.002

6.26

0.097

226189_at

ITGB8

integrin, beta 8

0.002

6.06

0.094

213424_at

KIAA0895

KIAA0895

0.005

6.01

0.117

216623_x_at

TOX3

TOX high mobility group box family member 3

0.009

5.80

0.145

222843_at

FIGNL1

fidgetin-like 1

0.013

5.67

0.163

201250_s_at

SLC2A1

solute carrier family 2 (facilitated glucose transporter), member 1

0.001

5.59

0.068

223062_s_at

PSAT1

phosphoserine aminotransferase 1

0.011

5.57

0.157

232151_at

MACC1

metastasis associated in colon cancer 1

0.010

5.40

0.150

217901_at

DSG2

desmoglein 2

0.026

5.34

0.207

235170_at

ZNF92

zinc finger protein 92

0.015

5.03

0.171

203865_s_at

ADARB1

adenosine deaminase, RNA-specific, B1

0.001

−5.06

0.084

213438_at

NFASC

neurofascin

0.000

−5.11

0.053

228268_at

FMO2

flavin containing monooxygenase 2 (non-functional)

0.005

−5.11

0.120

219895_at

TMEM255A

transmembrane protein 255A

0.001

−5.13

0.065

212713_at

MFAP4

microfibrillar-associated protein 4

0.004

−5.22

0.115

225660_at

SEMA6A

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

0.005

−5.24

0.123

204777_s_at

MAL

mal, T-cell differentiation protein

0.001

−5.33

0.075

210038_at

PRKCQ

protein kinase C, theta

0.012

−5.35

0.160

219228_at

ZNF331

zinc finger protein 331

0.003

−5.49

0.098

228850_s_at

SLIT2

slit homolog 2 (Drosophila)

0.001

−5.54

0.069

236029_at

FAT3

FAT atypical cadherin 3

0.001

−5.56

0.083

1554547_at

FAM13C

family with sequence similarity 13, member C

0.000

−5.71

0.060

242290_at

TACC1

transforming, acidic coiled-coil containing protein 1

0.001

−5.78

0.071

209763_at

CHRDL1

chordin-like 1

0.004

−5.85

0.117

209220_at

GPC3

glypican 3

0.015

−6.03

0.171

220170_at

FHL5

four and a half LIM domains 5

0.002

−6.26

0.092

238332_at

ANKRD29

ankyrin repeat domain 29

0.007

−6.58

0.131

235849_at

SCARA5

scavenger receptor class A, member 5 (putative)

0.001

−6.66

0.080

243818_at

SFTA1P

surfactant associated 1, pseudogene

0.001

−6.72

0.069

209612_s_at

ADH1B

alcohol dehydrogenase 1B (class I), beta polypeptide

0.006

−6.73

0.124

204719_at

ABCA8

ATP-binding cassette, sub-family A (ABC1), member 8

0.001

−6.83

0.081

201539_s_at

FHL1

four and a half LIM domains 1

0.002

−6.89

0.088

217504_at

ABCA6

ATP-binding cassette, sub-family A (ABC1), member 6

0.003

−6.91

0.103

209613_s_at

ADH1B

alcohol dehydrogenase 1B (class I), beta polypeptide

0.001

−7.11

0.070

211726_s_at

FMO2

flavin containing monooxygenase 2

0.000

−7.24

0.050

229641_at

CCBE1

collagen and calcium binding EGF domains 1

0.002

−7.51

0.097

224061_at

INMT

indolethylamine N-methyltransferase

0.005

−7.54

0.119

225895_at

SYNPO2

synaptopodin 2

0.002

−7.83

0.092

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