Table 2 MethylCap-seq study characteristics.
From: Exploratory analysis of the human breast DNA methylation profile upon soymilk exposure
ID | Treatment | Coverage | Mapped | % Mapped | Library size |
|---|---|---|---|---|---|
SB1 | Soymilk | 23641310 | 15130395 | 64.00% | 3230581 |
SB2 | Soymilk | 20005124 | 13364407 | 66.80% | 2344832 |
SB3 | Soymilk | 20596052 | 13283325 | 64.49% | 3120649 |
SB4 | Soymilk | 23605776 | 16486437 | 69.84% | 2402701 |
SB5 | Control | 52472379 | 36240165 | 69.07% | 4747398 |
SB6 | Control | 28784091 | 19727820 | 68.54% | 2826594 |
SB7 | Control | 50403081 | 34620817 | 68.69% | 4832033 |
SB8 | Soymilk | 32235327 | 22806551 | 70.75% | 3336655 |
SB9 | Control* | 30410592 | 21433945 | 70.48% | NA |
SB10 | Control | 47379658 | 33209046 | 70.09% | 4353299 |
SB11 | Soymilk | 33798425 | 24635918 | 72.89% | 1859969 |
SB12 | Control | 32412829 | 22138492 | 68.30% | 3408381 |
SB13 | Control | 28898463 | 19854562 | 68.70% | 3212742 |
SB14 | Control | 26743842 | 18134534 | 67.81% | 3319438 |
SB15 | Control | 30217735 | 19679085 | 65.12% | 4302979 |
SB16 | Soymilk | 21840292 | 14934423 | 68.38% | 2837047 |
SB17 | Soymilk* | 25667328 | 18073389 | 70.41% | NA |
SB18 | Soymilk | 24902261 | 15842246 | 63.62% | 4044801 |
SB19 | Soymilk | 28582845 | 20225632 | 70.76% | 2789297 |
SB20 | Control | 29028050 | 19954925 | 68.74% | 3169451 |
SB21 | Control* | 32123694 | 21969096 | 68.39% | 3446305 |
SB22 | Soymilk* | 30182885 | 20833618 | 69.02% | 2894860 |
