Table 1 Details of the Xanthomonas euvesicatoria and other strains used in inclusivity and exclusivity panels to validate the loop-mediated isothermal amplification assay developed for specific and rapid detection of X. euvesicatoria.

From: Development of a genome-informed loop-mediated isothermal amplification assay for rapid and specific detection of Xanthomonas euvesicatoria

Species	Isolate Number	Other Associated name	Host	Origin	LAMP Results	GenBank Accession Number
X. euvesicatoria	A1701	B94	Tomato	California, USA	+	MG847408
X. euvesicatoria	A1711	K625, B63	Tomato	California, USA	+	MG847400
X. euvesicatoria	A1781	K336	Pepper	Hawaii, USA	+	MG847392
X. euvesicatoria	A1786	K339	Pepper	Hawaii, USA	+	MG847389
X. euvesicatoria	A6259	K344, 82-16	Tomato	Florida, USA	+	MG847359
X. euvesicatoria	A3480	XVT20	Tomato	Taiwan	+	MG847376
X. euvesicatoria	A6260	83-13b	Tomato	Florida, USA	+	MG847355
X. euvesicatoria	A3478	K348, XVT8	Tomato	Taiwan	+	MG847378
X. euvesicatoria	A1702	K618, B-111	Tomato	California, USA	+	MG847407
X. euvesicatoria	A1706	K622/B-62	Tomato	California, USA	+	MG847403
X. euvesicatoria	A1708	K623/B-93	Tomato	California, USA	+	MG847402
X. euvesicatoria	A1709	K624/B108	Tomato	California, USA	+	MG847401
X. euvesicatoria	A1713	K626/B78	Tomato	California, USA	+	MG847399
X. euvesicatoria	A1714	K627, B-81	Tomato	California, USA	+	MG847398
X. euvesicatoria	A1715	K628/B-92	Tomato	California, USA	+	MG847397
X. euvesicatoria	A1716	K629/B-95	Tomato	California, USA	+	MG847396
X. euvesicatoria	A1718	K630/B-106	Tomato	California, USA	+	MG847395
X. euvesicatoria	A1757	K631/XCV-1	Tomato	California, USA	+	MG847394
X. euvesicatoria	A1773	K645/XCV-2	Tomato	California, USA	+	MG847393
X. euvesicatoria	A1788	K646/KPL	Pepper	Hawaii, USA	+	MG847388
X. euvesicatoria	A280	A280-2	Tomato	Hawaii, USA	+	MG847411
X. euvesicatoria	A1785	K338	Pepper	Hawaii, USA	+	MG847390
X. euvesicatoria	A1783	MCG	Pepper	Hawaii, USA	+	MG847391
X. euvesicatoria	A1918	65-2	Tomato	Florida, USA	+	MG847386
X. euvesicatoria	A3799	Xv158	Tomato	Florida, USA	+	MG847367
X. euvesicatoria	A4468	XVT-38	Tomato	Taiwan	+	MG847365
X. euvesicatoria	A4476	XVT-76	Tomato	Taiwan	+	MG847364
X. euvesicatoria	A4477	XVT-77	Tomato	Taiwan	+	MG847363
X. euvesicatoria	A1921	69-13	Tomato	Florida, USA	+	MG847385
X. euvesicatoria	A1922	71-21	Pepper	Florida, USA	+	MG847384
X. euvesicatoria	A1923	71-29a	Tomato	Florida, USA	+	MG847383
X. euvesicatoria	A1924	72-7	Pepper	Florida, USA	+	MG847382
X. euvesicatoria	A1925	75-4	Tomato	Florida, USA	+	MG847381
*X. euvesicatoria	A1917	62-2	Tomato	Florida, USA	+
*X. euvesicatoria	A3796	Xv155	Tomato	Florida, USA	+
*X. euvesicatoria	A3797	Xv156	Tomato	Taiwan	+
X. euvesicatoria	A4478	XVT-80	Tomato	Taiwan	+	MG847362
X. euvesicatoria	A4479	XVT-82	Tomato	Taiwan	+	MG847361
X. euvesicatoria	A4465	XVT-25	Tomato	Taiwan	+	MG847366
X. vesicatoria	A3614	XV142	Tomato	South America	−	MG847375
X. vesicatoria	A3615	XV143	Tomato	South America	−	MG847374
X. vesicatoria	A3619	XV147	Tomato	South America	−	MG847370
X. vesicatoria	A3617	XV145	Tomato	South America	−	MG847372
X. vesicatoria	A3790	Xv140	Tomato	Australia	−	MG847368
X. vesicatoria	A1887	K663/A135-1	Tomato	Hawaii, USA	−	MG847387
X. vesicatoria	A1703	K619/B-118	Tomato	California, USA	−	MG847406
X. vesicatoria	A1704	K620/B-122	Tomato	California, USA	−	MG847405
X. vesicatoria	A1705	K621/XV-1	Tomato	California, USA	−	MG847404
X. vesicatoria	A1696	K613, B-71	Tomato	California, USA	−	MG847409
X. vesicatoria	A3616	XV144	Tomato	South America	−	MG847373
X. vesicatoria	A3618	XV146	Tomato	South America	−	MG847371
X. vesicatoria	A3788	CC12, Xv138	Tomato	Indiana, USA	−	MG847369
X. gardneri	Xg-51		Tomato	Canada	−	MG847357
X. gardneri	Xg 444		Tomato	Costa Rica	−	MG847356
X. perforans	Xp-1	Gev 4E5	Tomato	Florida, USA	−	MG847358
X. perforans	Xp-2	91-118	Tomato	Florida, USA	−	MG847412
X. campestris pv. campestris	A1694	K611, B-60	Tomato	California, USA	−	MG847410
X. citri subsp. citri	A3015	XC64B	Lemon	Argentina	−	MG847380
X. axonopodis pv. glycines	A3477	XVP26	Pepper	Taiwan	−	MG847379
X. axonopodis pv. glycines	A3479	XVP29	Pepper	Taiwan	−	MG847377
X. axonopodis pv. dieffenbachiae	A6234	D108, K025,	Anthurium	Hawaii, USA	−	MG847360
X. axonopodis pv. allii	A206	206-5	Bulb onion	Hawaii, USA	−
X. albilineans	A3192	G44-Ser1	Sugarcane	Guadeloupe	−
Dickeya zeae	A6174		Pineapple	Hawaii, USA	−
D. zeae	A5647	CFBP 1531	Maize	Wisconsin, USA	−
D. dadantii	A5642	CFBP 3855	African violet	France	−
D. dieffenbachiae	A6060	CFBP3698	Musa sp.	Cuba	−
D. chrysanthemi	A6062	CFBP3701	Tomato	France	−
D. solani	A5581	PRI 2187	Potato	Israel	−
Clavibacter michiganensis subsp. nebraskensis	A6095	20037	Maize	Nebraska, USA	−
C. michiganensis subsp. michiganensis	A2058	H-160, K073	Tomato	Idaho, USA	−
Pseudomonas syringae pv. syringae	A6178	CC36	Tomato	Georgia, USA	−
P. syringae pv. syringae	A3830	164, CC46	Rice	South Africa	−
Pectobacterium carotovorum subsp. carotovorum	A5280	1-#31	Irrigation water	Hawaii, USA	−
P. atrosepticum	A1850	IPM 1260	Potato	Colorado, USA	−
Curtobacterium flaccumfaciens subsp. poinsettiae	A6271	70397	Poinsettia	New York, USA	−
Ralstonia solanacearum	A5491	EB2	Eggplant	Indonesia	−
Agrobacterium tumefaciens	A2961	C58	Cherry	New York, USA	−
Rathayibacter rathayi	A1152	ATCC13659, NCPPB 80		United Kingdom	−
Pantoea ananatis	A6220	DP133	Maize	Iowa, USA	−

+ and – are indicators of positive amplification (positive result) and no amplification (negative result); *sequences were not submitted to NCBI GenBank database because of poor quality or short length; strains with no NCBI GenBank accession numbers were not sequenced.

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Table 1 Details of the Xanthomonas euvesicatoria and other strains used in inclusivity and exclusivity panels to validate the loop-mediated isothermal amplification assay developed for specific and rapid detection of X. euvesicatoria.

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