Table 1 Summary of T. cruzi assembled genomes.

From: Genomic assemblies of newly sequenced Trypanosoma cruzi strains reveal new genomic expansion and greater complexity

Strain

DTU

Size (MB)

GC (%)

Contig N50 *

Max lenght (PB)

Min lenght (BP)

Mean contigs (BP)

Contigs

Scaff level*

Coverage (%)

Sequencing method

Dm28c

I

27.34

53.33

78,389

462,134

2,004

22,601

1,210

Scaff*

63

454*

Jrcl4

I

41.48

52.45

83,591

828,981

200

2,709

15,312

Scaff

69

454

Sylvio X10

I

38.58

52.91

2,307

72,500

202

1,428

27,019

Contigs*

30

454 + illumina

Y

II

39.34

51.43

11,782

304,87

500

3,885

10,127

Contigs

71

Illumina

Esmeraldo

II

38.08

52.09

66,229

483,664

200

2,409

15,803

Scaff

60

454

Bug2148

V

55.22

51.63

196,760

1,305,792

585

59,129

934

Contigs

68

PacBio*

Tula

VI

83.51

50.63

7,772

242,476

200

1,826

45,711

Scaff

50

454

BNEL

VI

32.52

43.94

870,934

2,371,736

77,958

793,392

41

Chrom*

14

454 + BAC*

BEL

VI

32.52

40.35

870,934

2,371,736

77,958

793,391

41

Chrom

14

454 + BAC

B7

VI

38.65

52.87

25,781

335,615

235

2,302

16,783

Contigs

30

454 + illumina

  1. *Contig N50: is a statistic median such that the 50% of the entire assembly is contained in contigs equal to or larger than this value. *Scaff level: Scaffolded level assembly. *Chrom: Chromosome level assembly. *454: Roche 454. *PacBio: Pacific Biosciences. *WGS: Whole Genome Sequecing. *BAC: Bacterial Artificial Chromosome. Previous T. cruzi genomes available at https://www.ncbi.nlm.nih.gov/genome/genomes/25? Newly sequenced genomes are underlined.
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