Table 1 Changes in protein secretion in TIMP3 expressing cells.

From: Increased TIMP-3 expression alters the cellular secretome through dual inhibition of the metalloprotease ADAM10 and ligand-binding of the LRP-1 receptor

Protein name

Gene

ID

Ratio

p-value

pept

Selected soluble proteins increased in the conditioned medium of TIMP3 expressing cells

Metalloproteinase inhibitor 3

TIMP3

P35625

793.91

1.65E-05

17

Pentraxin-related protein PTX3

PTX3

P26022

9.55

1.41E-04

18

Metalloproteinase inhibitor 1

TIMP-1

P01033

4.51

1.77E-02

13

Macrophage migration inhibitory factor

MIF

P14174

2.82

1.02E-02

6

Selected soluble proteins decreased in the conditioned medium of TIMP3 expressing cells

Galectin-3-binding protein

LGALS3BP

Q08380

0.18

1,99E-02

34

Laminin subunit alpha-4

LAMA4

LAMA4

0.21

2.55E-02

43

Plasma alpha-L-fucosidase

FUCA2

Q9BTY2

0.24

4.85E-02

22

Selected membrane proteins showing reduced shedding in TIMP3 expressing cells

Ephrin-B2

EFNB2

P52799

0.22

2.18E-02

5

Protocadherin-9

PCDH9

Q9HC56

0.29

8.61E-03

14

Proprotein convertase subtilisin/kexin type-5

PCSK5

Q92824

0.31

1.37E-02

19

Transforming growth factor beta receptor type 3

TGFBR3

Q03167

0.36

2.73E-02

8

Amyloid-like protein 2

APLP2

Q06481

0.37

1.11E-03

22

Amyloid beta A4 protein

APP

P05067

0.37

6.66E-03

29

Ephrin type-A receptor 4

EPHA4

P54764

0.44

3.89E-02

7

Neuropilin-1

NRP1

O14786

0.49

4.16E-04

15

Receptor-type tyrosine-protein phosphatase kappa

PTPRK

Q15262

0.51

2.58E-02

13

Prostaglandin F2 receptor negative regulator

PTGFRN

Q9P2B2

0.54

6.15E-03

13

Cell adhesion molecule 1

CADM1

Q9BY67

0.65

2.86E-02

8

Anthrax toxin receptor 1

ANTXR1

Q9H6X2

0.71

8.25E-03

3

Neogenin

NEO1

Q92859

0.75

5.00E-03

20

  1. ID: Uniprot accession number of the protein.
  2. Ratio: mean ratio of label-free quantification intensities between HEK/TIMP-3 and control HEK293 cells (n = 6).
  3. p-value: for six biological replicates.
  4. pept: number of identified unique peptides of the protein group.