Table 1 Summary of the Plasmodium falciparum var2csa assembled 7Kb fragment and its diversity by country using the field isolates with little evidence of mixed infections (n = 1,249).
Population | n | Number sites without missing data | Number of Haplotypes | Haplotype diversity (Hd) | Nucleotide diversity (π) | Average no. of nucleotide differences (pairwise comparison) |
|---|---|---|---|---|---|---|
Burkina Faso | 7 | — | — | — | — | — |
Cameroon | 49 | 5317 | 44 | 0.995 | 0.0828 | 440 |
Gambia | 31 | 6700 | 21 | 0.963 | 0.0795 | 533 |
Ghana | 116 | 6037 | 105 | 0.998 | 0.0798 | 482 |
Guinea | 33 | 6553 | 32 | 0.998 | 0.0866 | 567 |
Mali | 15 | 6792 | 15 | 1 | 0.0873 | 593 |
Nigeria | 3 | — | — | — | — | — |
DRC | 77 | 6484 | 71 | 0.998 | 0.0815 | 530 |
Kenya | 21 | 6784 | 19 | 0.990 | 0.0821 | 557 |
Malawi | 95 | 5953 | 63 | 0.992 | 0.0819 | 488 |
Tanzania | 30 | 6578 | 30 | 1 | 0.0892 | 587 |
Uganda | 4 | — | — | — | — | — |
Madagascar | 10 | 6899 | 10 | 1 | 0.0976 | 673 |
Bangladesh | 11 | 6830 | 10 | 0.982 | 0.0896 | 612 |
Cambodia | 360 | 4828 | 46 | 0.911 | 0.0696 | 336 |
Laos | 40 | 6776 | 29 | 0.979 | 0.0786 | 533 |
Myanmar | 72 | 6784 | 27 | 0.949 | 0.0836 | 567 |
Thailand | 184 | 6651 | 47 | 0.968 | 0.0809 | 538 |
Vietnam | 68 | 6712 | 30 | 0.893 | 0.0794 | 533 |
PNG | 3 | — | — | — | — | — |
Brazil | 3 | — | — | — | — | — |
Colombia | 10 | 7045 | 6 | 0.889 | 0.0775 | 546 |
Peru | 6 | — | — | — | — | — |
