Table 3 Results of haplotype based association analysis.
LOCUS | HAPLOTYPE | F_A | F_U | χ2 | DF | P | SNPs |
|---|---|---|---|---|---|---|---|
H1 | OMNIBUS | - | - | 7.55 | 2 | 0.0230 | rs699947|rs1570360 |
H1 | AA | 0.14 | 0.18 | 7.54 | 1 | 0.0060 | rs699947|rs1570360 |
H1 | AG | 0.08 | 0.07 | 0.09 | 1 | 0.7687 | rs699947|rs1570360 |
H1 | CG | 0.79 | 0.75 | 4.89 | 1 | 0.0270 | rs699947|rs1570360 |
H2 | OMNIBUS | — | — | 14.48 | 2 | 0.0007 | rs2010963|rs25648 |
H2 | CT | 0.09 | 0.09 | 0.05 | 1 | 0.8225 | rs2010963|rs25648 |
H2 | CC | 0.41 | 0.34 | 13.99 | 1 | 0.0002 | rs2010963|rs25648 |
H2 | GC | 0.50 | 0.57 | 12.06 | 1 | 0.0005 | rs2010963|rs25648 |
H3 | OMNIBUS | — | — | 1.22 | 2 | 0.5427 | rs1885657|rs3024987 |
H3 | CT | 0.17 | 0.17 | 0.20 | 1 | 0.6546 | rs1885657|rs3024987 |
H3 | CC | 0.13 | 0.12 | 1.15 | 1 | 0.2839 | rs1885657|rs3024987 |
H3 | TC | 0.70 | 0.71 | 0.16 | 1 | 0.6913 | rs1885657|rs3024987 |
H4 | OMNIBUS | — | — | 0.21 | 2 | 0.9015 | rs62401162|rs3025006 |
H4 | CC | 0.12 | 0.12 | 0.11 | 1 | 0.7449 | rs62401162|rs3025006 |
H4 | TC | 0.30 | 0.30 | 0.05 | 1 | 0.8173 | rs62401162|rs3025006 |
H4 | TT | 0.57 | 0.58 | 0.18 | 1 | 0.6689 | rs62401162|rs3025006 |
H5 | OMNIBUS | — | — | 3.57 | 3 | 0.3112 | rs3025020|rs3025021|rs3025029 |
H5 | TTA | 0.17 | 0.18 | 0.42 | 1 | 0.5161 | rs3025020|rs3025021|rs3025029 |
H5 | TTG | 0.02 | 0.02 | 0.09 | 1 | 0.7583 | rs3025020|rs3025021|rs3025029 |
H5 | TCG | 0.16 | 0.14 | 3.34 | 1 | 0.0678 | rs3025020|rs3025021|rs3025029 |
H5 | CCG | 0.65 | 0.67 | 0.83 | 1 | 0.3623 | rs3025020|rs3025021|rs3025029 |
H6 | OMNIBUS | — | — | 0.15 | 2 | 0.9270 | rs3025036|rs10434 |
H6 | GA | 0.14 | 0.14 | 0.01 | 1 | 0.9056 | rs3025036|rs10434 |
H6 | CA | 0.08 | 0.07 | 0.13 | 1 | 0.7223 | rs3025036|rs10434 |
H6 | CG | 0.79 | 0.79 | 0.11 | 1 | 0.7440 | rs3025036|rs10434 |
