Figure 6
(A) Motif analysis of VaWRKY protein family. The distribution of 20 conserved motifs in VaWRKY proteins, identified by MEME program, was shown as colored boxes. The sequences of these conserved motifs were listed in Supplementary Table S4. *No conserved motif could be found in VaWRKY84 protein. (B) Motif analysis of VrWRKY protein family. The distribution of 20 conserved motifs in VrWRKY proteins, identified by MEME program, was shown as colored boxes. The sequences of these conserved motifs were listed in Supplementary Table S4. (C) Analysis of the consensus sequence of the WRKY domain in (i) VaWRKY family, and (ii) VrWRKY family. Analysis of the 91 VaWRKY proteins and 85 VrWRKY proteins was performed using the MEME suite. The overall height in each stack indicates the sequence conservation at each position. The height of each residue letter is proportional to the relative frequency of the corresponding residue. Amino acids are colored according to their chemical properties: green for polar, non-charged, non-aliphatic residues (N,Q,S,T), magenta for the most acidic residues (D,E), blue for the most hydrophobic residues (A,C,F,I,L,V,W and M), red for positively charged residues (K,R), pink for histidine (H), orange for glycine (G), yellow for proline (P) and turquoise for tyrosine (Y).
