Table 1 Genes that are commonly expressed in the holoparasitic and photosynthetic species analysed in this study.

From: Comparative analysis of nucleus-encoded plastid-targeting proteins in Rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially divergent functions

Annotation

Functional Category

Location

MapMan function category

60S ribosomal protein L10

Protein

S

protein.synthesis.chlorop/mito.plastid

F-box protein

Protein

U

protein.degradation.ubiquitin

calmodulin binding protein-like

Protein

T

signalling.calcium

arginine N-methyltransferase

Protein

Y

methyl transferases

peptidyl-prolyl cis-trans isomerase

Protein

L

protein.folding

SNARE associated Golgi protein family

Transport

C

not assigned.unknown

solute carrier family

Transport

C

not assigned.no ontology

potassium transporter

Transport

C

transport.potassium

ABC transporter family protein

Transport

Y

transport.ABC transporters and multidrug resistance systems

DEAD/DEAH box RNA helicase

Nucleic

C

RNA. DEAD/DEAH BOX helicase

zinc finger family protein

Nucleic

U

protein.degradation.ubiquitin

tRNA/rRNA methyltransferase

Nucleic

Y

not assigned.no ontology

glutathione S-transferase

Redox

T

redox.glutaredoxins

glutaredoxin

Redox

U

transport.calcium

thioredoxin

Redox

C

redox.thioredoxin

malate dehydrogenase

Other

M

TCA/org. transformation.TCA.

amidase

Other

Y

miscellaneous nitrilases

protein phosphatase 2C

Signal

U

protein.postranslational modification

serine/threonine kinases

Signal

C

protein.postranslational modification

glycosyl transferase

Carbohydrate

P

cell wall.cellulose synthesis

dynamin-related protein

Cell cycle

oV

cell.division.plastid

pollen specific protein

Unknown

C

not assigned.unknown

  1. C = chloroplast, L = lumen, M = mitochondrion, P = plasma membrane, S = stroma, T = thylakoid membrane, U = nucleus, oV = outer envelope, Y = cytoplasm.