Table 1 QTLs identified by CIM and GCIM analysis.
Description | Unique QTL | Identified QTL | Traita | LGs | CIM | GCIM | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Peak position (cM) | LOD | R2 | Flanking markers | Additive effect | Dominant effect | Peak position (cM) | LOD | R2 | Flanking markers | Additive effect | Dominant effect | |||||
Original linkage map | qSS4 | TSW4 | TSW | LG4 | 18.01 | 4.23 | 8.87% | Marker7734-Marker2376 | −11.99 | 13.44 | ||||||
SL4 | SL | LG4 | 18.01 | 4.41 | 8.73% | Marker7734-Marker2376 | −0.06 | 0.12 | ||||||||
SW4 | SW | LG4 | 18.01 | 4.78 | 10.03% | Marker7734-Marker7737 | −0.05 | 0.06 | ||||||||
qSS6 | TSW6 | TSW | LG6 | 24.06 | 46.9 | 93.00% | Marker3519-Marker3535 | 42.8 | 35.28 | 19.57 | 32.6 | 72.80% | Marker3513-Marker3519 | 39.26 | 27.57 | |
SL6 | SL | LG6 | 24.06 | 60.24 | 94.11% | Marker3519-Marker3535 | 0.3 | 0.23 | 19.57 | 29.6 | 63.12% | Marker3513-Marker3519 | 0.26 | 0.14 | ||
SW6 | SW | LG6 | 24.06 | 48.68 | 95.26% | Marker3519-Marker3535 | 0.18 | 0.13 | 19.57 | 24.6 | 49.54% | Marker3513-Marker3519 | 0.14 | 0.05 | ||
qST6 | ST6 | ST | LG6 | 15.86 | 18.05 | 37.92% | Marker3469-Marker3495 | 0.01 | 0.01 | |||||||
TSW6|ST b | LG6 | 25.06 | 7.56 | 38.78% | Marker3519-Marker3535 | 15.64 | 17.40 | 19.57 | 3.95 | 7.46% | Marker3513-Marker3519 | 8.75 | ||||
Re-constructed LG6 | qSS6 | TSW6 | TSW | LG6 | 28.91 | 66.2 | 88.64% | dcaps6_S6-indel14_S6 | 41.7 | 34.65 | 28.96 | 68.9 | 91.40% | dcaps9_S6 | 42.83 | 34.00 |
SL6 | SL | LG6 | 28.91 | 77.1 | 92.39% | dcaps6_S6-indel14_S6 | 0.3 | 0.22 | 28.96 | 71.7 | 79.05% | dcaps9_S6 | 0.29 | 0.18 | ||
SW6 | SW | LG6 | 28.91 | 68.5 | 94.10% | dcaps6_S6-indel14_S6 | 0.18 | 0.13 | 28.96 | 55.3 | 67.70% | dcaps9_S6 | 0.16 | 0.08 | ||
qST6 | ST6 | ST | LG6 | 29.01 | 15.9 | 35.29% | caps1_S6-caps5_S6 | 0.01 | 0.01 | |||||||
