Table 1 Genome assembly statistics for P. vulgaris LH_v2 and gene annotations at various stages of the assembly process.

From: Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene

 

SOAP contigs

SOAP scaffolds

Scaffolds (gap filled)

Scaffolds ≥200 bp*

Total

1,787,577

581,256

581,256

67,491

Total size (Mb)

581.3

497.8

482.0

411.1

Ns (%)

0

21.0

6.2

7.3

N50 (kb)

1.0

249.8

236.1

294.8

NG50 (kb)

1.1

256.0

230.0

229.8

Max length

53 kb

1.7 Mb

1.6 Mb

1.6 Mb

Repeat (%)

—

—

41.63

37.03

Gene loci

—

—

26,116

24,599

Alternative spliceoforms

—

—

4,488

4,488

Mean CDS length (bp)

—

—

1,401

1,466

  1. *Contaminated contigs removed.
  2. Genome statistics for P. vulgaris LH_v2 contigs, scaffolds, gap-filled scaffolds, and gap-filled scaffolds ≥200 bp: only the gap-filled scaffolds were annotated. The final assembly (“Scaffolds ≥200 bp”) comprises scaffolds ≥200 bp with non-Primula and chloroplast containing scaffolds removed. Ns = ambiguous bases.
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