Table 2 The number of genes and transcripts identified from transcriptome analysis.
Description | Samples | Summary | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
U-I 1 | U-I 2 | U-I 3 | B-I 1 | B-I 2 | B-I 3 | V-I 1 | V-I 2 | V-I 3 | P-I 1 | P-I 2 | P-I 3 | ||
Gene | |||||||||||||
   Known | 1,707 | 1,720 | 1,504 | 1,641 | 1,617 | 1,669 | 1,670 | 1,751 | 1,664 | 1,348 | 1,588 | 1,243 | 1,969 |
   Known (New Isoforms) | 18,564 | 18,567 | 18,561 | 18,562 | 18,564 | 18,567 | 18,563 | 18,568 | 18,563 | 18,539 | 18,563 | 18,501 | 18,571 |
   Novel | 19,380 | 19,527 | 19,066 | 19,474 | 19,338 | 19,495 | 19,528 | 19,547 | 19,461 | 18,443 | 19,287 | 17,765 | 19,560 |
   TOTAL | 39,651 | 39,814 | 39,131 | 39,677 | 39,519 | 39,731 | 39,761 | 39,866 | 39,688 | 38,330 | 39,438 | 37,509 | 40,100 |
Transcript | |||||||||||||
   Known | 25,572 | 25,078 | 24,574 | 24,900 | 25,079 | 24,966 | 24,479 | 24,618 | 24,189 | 23,061 | 24,516 | 22,945 | 27,216 |
   Novel | 93,402 | 93,533 | 93,017 | 93,505 | 93,345 | 93,513 | 93,532 | 93,527 | 93,416 | 92,260 | 93,297 | 91,281 | 93,664 |
   TOTAL | 118,974 | 118,611 | 117,591 | 118,405 | 118,424 | 118,479 | 118,011 | 118,145 | 117,605 | 115,321 | 117,813 | 114,226 | 120,880 |
