Figure 3
From: Analysis of genetic diversity of Xanthomonas oryzae pv. oryzae populations in Taiwan
Alignment of CRISPR spacers from the Xanthomonas oryzae pv. oryzae (Xoo) genomic sequences. (a) Comparison of the last 10 spacer sequences beginning from LDR. The same color block indicates the same or similar (<2 nucleotides mismatch) spacers shared in the group. The first column represents the order of the 1st (S-01) to the 10th (S-10) of the last 10 spacers in the CRISPR region. The number indicates the sequence ID in the spacer library (Supplementary Table S2). (b) Alignment of entire CRISPR spacers in all fully sequenced Xoo isolates. Xoc YM15 is the only Xoc isolate containing CRISPR system, and this isolate is used as an outgroup in the analysis. The colored bar at the end of the phylogenetic tree represents the groups defined from genome SNP analysis (Fig. 4a).
