Figure 4
From: Analysis of genetic diversity of Xanthomonas oryzae pv. oryzae populations in Taiwan
Phylogenetic relationships of Xanthomonas oryzae pv. oryzae (Xoo) isolates. (a) Maximum likelihood phylogenetic tree of sequenced Xoo isolates is based on 86,919 concatenated core SNPs. Xoo-A, Xoo-B, and Xoo-C groups are indicated by the green line, blue line and red line, respectively. In Xoo-A, three different background colors represent distinct subgroups. African Xoo isolate, AXO1947, and Xoc BLS256 were used as outgroups. (b,c) A heatmap of hierarchical clustering is based on 148 transposases between Xoo isolates (b) and 751 less conserved genes between Xoo isolates (c), and the colored bar represents the groups defined from genome SNP analysis.
