Figure 6

Genome comparison of Xanthomonas oryzae pv. oryzae isolates. (a) Comparison of type III secretion system effectors in analyzed Xoo isolates with genome sequences. Different allele types of effectors were grouped and colored. The color scale indicates types of alleles present in each class of effectors. N/A represent TALEs that were not assigned to any class in AnnoTALE³³. Different colors in the N/A group do not share similar RVD compositions. Stars represent truncated TALEs/interfering TALEs or pseudo-Xop genes. The color-bar at the top of the heatmap indicates the classification based on genome SNPs. On the right y axis: c; core gene, l; less conserved gene, and u; unique gene. (b) TALE target prediction of Xoo-A group of Xoo isolates. A recognition possibility data of 200 predicted target genes of the rice host in each TALE were generated using TALVEZ⁵⁵, and an Oryza sativa genome, MSU7, was used as the template for target prediction. The top one target of the list was normalized to 1, and values for different TALEs that targeted to the same gene were calculated as a sum of the normalized values in each TALE. The known TALE-targeted gene IDs were shown at the right side of the heatmap. The gene IDs and recognition scores are shown in Supplementary Tables S6 and S7.