Figure 7

Transcriptome profiles of predicted TALE-targeted rice genes on O. sativa TNG67. (a) The up-regulated and down-regulated genes of O. sativa TNG67 were profiled after 7 days of Xoo XF89b and XM9 inoculation compared to mock-inoculated rice samples, and the relative expression levels of the top 200 TALE-targeted genes predicted by TALVEZ⁵⁵ are listed. The relative expression levels were calculated from infected samples divided by mock-treated samples. Every column represents a different gene list which was predicted as the putative targets of individual TALEs. TAL3a_XM9 only had three DNA binding residues, and its targets were excluded from the prediction lists. (b) The Venn diagram of up-regulated genes (≥2-fold changes) in the TALE-targeted prediction lists between XF89b and XM9. A total of 244 putative TALE targets in XF89b and XM9 were included in the comparison.