Table 1 Characteristics of the Trichobilharzia szidati and T. regenti transcriptomes and annotation of their predicted proteomes.

From: Molecular evidence for distinct modes of nutrient acquisition between visceral and neurotropic schistosomes of birds

 

T. szidati

T. regenti 18

Transcriptome

  Total sequences

13,007

12,705

  Minimum and maximum sequence lengths; N50 (bp)

160-39,264; 3,402

115-41,111; 3,682

Predicted proteome

  Total sequences

13,007

12,705

  Minimum and maximum sequence lengths; N50 (bp)

30-11,108; 671

30-8,133; 805

Matches to conserved metazoan BUSCO genes

  Complete single copy orthologous groupsa

603 (61.7)

659 (67.4)

  Complete, duplicated orthologous groupsa

97 (9.9)

81 (8.3)

  Fragmented orthologous groupsa

87 (8.9)

57 (5.8)

  Total BUSCO orthologous groupsa

978 (100)

978 (100)

Protein annotation

  NCBI nr databaseb

10,457 (80.4)

10,900 (85.8)

  SwissProtb

7,633 (58.7)

8,120 (63.9)

  MEROPS peptidasesb

357 (2.7)

392 (3.1)

  MEROPS inhibitorsb

249 (1.9)

259 (2.0)

  KEGG BRITE protein familiesc

5,663 (43.5; 3,065)

5,935 (46.7; 3,275)

  KEGG pathwayc

3,452 (26.5; 1,837)

3,611 (28.4; 1,934)

  InterProScanb

8,171 (62.8)

9,642 (75.9)

  Gene ontology annotation (InterProScan)b

6,730 (51.7)

6,961 (54.8)

Proteins predicted to be excreted/secreted

642 (4.9)

468 (3.7)

  1. aNumber of proteins homologous to BUSCO orthologous groups (% of total groups).
  2. bNumber of proteins homologous to entries in database (% of predicted proteome).
  3. cNumber of proteins homologous to entries in the KEGG database (% of predicted proteome; number of conserved KEGG terms).