Table 1 Splicing events in CD4 T cells: infected vs uninfected (DMSO_I vs DMSO), uninfected treated with ABX464 vs uninfected and untreated (464 vs DMSO) and infected treated with ABX464 vs infected and untreated (464_I vs DMSO_I).
ABX464_NI_VS_DMSO_NI | |||
|---|---|---|---|
Gene symbol | Ensembl ID | description | Event type |
LINC01119 | ENSG00000239332 | long intergenic non-protein coding RNA 1119 | A3 |
STMND1 | ENSG00000230873 | stathmin domain containing 1 | Alt exons |
ZNF177 | ENSG00000188629 | zinc finger protein 177 | A3 |
FGF22 | ENSG00000070388 | fibroblast growth factor 22 | A3 |
AL139035.1 | ENSG00000280710 | Clone-based | Alt exons |
MRPL52 | ENSG00000172590 | mitochondrial ribosomal protein L52 | A5; Alt exons |
HCG20 | ENSG00000228022 | HLA complex group 20 (non-protein coding) | Alt exons |
RHBDD2 | ENSG00000005486 | rhomboid domain containing 2 | Alt exons |
ABX464_I_VS_DMSO_I | |||
AL157955.2 | ENSG00000258826 | Clone-based | A3 |
TMEM147 | ENSG00000105677 | transmembrane protein 147 | RI |
COX6C | ENSG00000164919 | cytochrome c oxidase subunit 6C | Alt exons |
ATIC | ENSG00000138363 | 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase | A5 |
STMND1 | ENSG00000230873 | stathmin domain containing 1 | Alt exons |
GEM | ENSG00000164949 | GTP binding protein overexpressed in skeletal muscle | Alt Exons |
CDRT15 | ENSG00000223510 | CMT1A duplicated region transcript 15 | A5 |
WDR72 | ENSG00000166415 | WD repeat domain 72 | A5 |
SMIM11A | ENSG00000205670 | small integral membrane protein 11A | AL |
EGLN2 | ENSG00000269858 | egl-9 family hypoxia inducible factor 2 | Alt exons |
GNRHR2 | ENSG00000211451 | gonadotropin releasing hormone receptor 2 (pseudogene) | RI |
ZNF584 | ENSG00000171574 | zinc finger protein 584 | A3 |
LINC01869 | ENSG00000180279 | long intergenic non-protein coding RNA 1869 | A3 |
DMSO_I_VS_DMSO_NI | |||
CHTF8 | ENSG00000168802 | chromosome transmission fidelity factor 8 | Alt exons |
KCTD2 | ENSG00000180901 | potassium channel tetramerization domain containing 2 | A5 |
ETS1 | ENSG00000134954 | ETS proto-oncogene 1; transcription factor | A5 |
RASAL2-AS1 | ENSG00000224687 | RASAL2 antisense RNA 1 | A5 |
SLC16A9 | ENSG00000165449 | solute carrier family 16 member 9 | Alt exons |
RPP40 | ENSG00000124787 | ribonuclease P/MRP subunit p40 | Alt exons |
