Figure 3
From: Validation and quality assessment of macromolecular structures using complex network analysis
The 2D representations of two incorrect models (A,D) against their correct counterparts (B,E) using an organic layout visualized with Cytoscape (www.cytoscape.org). (A) Incorrect model (PDB id: 2FD1) and (B) correct counterpart (PDB id: 5FD1). (D) Incorrect model (PDB id: 2F2M) and (E) correct counterpart (PDB id: 3B5D), with the region around the Gly176-Gln177 edge shown in orange and marked. (C) Frequency of nodes against node degree of an incorrect (PDB id: 2FD1) and a correct protein model (PDB id: 5FD1) shown with blue and green bars, respectively. (F) Frequency of nodes against node degree of an incorrect (PDB id: 2F2M) and a correct protein model (PDB id: 3B5D) shown with blue and green bars, respectively.
