Table 1 Average number of reads for 5-Ht2cr alternative splicing variants within exon V of pre-mRNA in choroid plexus of PWScrp−/m5′LoxP and wild type male mice.

From: Ectopic expression of Snord115 in choroid plexus interferes with editing but not splicing of 5-Ht2c receptor pre-mRNA in mice

Genotype

Average mapped reads

Average 5-Ht2cr reads

Average 5-Ht2cr-tr reads

5-Ht2cr reads %

5-Ht2cr-tr reads %

PWScr p− /m5′loxP

6493463

2942551

3550911

~45,3%

~54,7%

WT

5569933

2516839

3053094

~45,2%

~54.8%

  1. Genotype: Genotypes of investigated mice. Average mapped reads: Average number of mapped reads of all BAM files. Average 5-Ht2cr reads: Average number of reads obtained for full-length 5-Ht2cr mRNA. Average 5-Ht2cr-tr reads: Average number of reads obtained for truncated (alternatively-spliced) 5-Ht2cr-tr mRNA. 5-Ht2cr reads and 5-Ht2cr-tr reads %: The percentage of all cDNA reads representing the functional and truncated receptor isoform is indicated.
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