Table 2 Average interaction energies of hydrophobic interactions during SMD simulation.
From: Steered molecular dynamic simulations of conformational lock of Cu, Zn-superoxide dismutase
Residues pair | Electrostatic energy(kJ/mol) | vdW energy(kJ/mol) | Total energy (kJ/mol) |
---|---|---|---|
Val5A-Gly49B | 1.51 | −1.94 | −0.43 |
Val5A-Asp50B | −0.25 | −2.86 | −3.11 |
Val7A-Asn51B | 0.13 | −2.96 | −2.83 |
Val7A-Thr52B | −0.02 | −2.08 | −2.10 |
Thr17A-Thr52B | 0.05 | −1.43 | −1.37 |
Phe48A-Ala150B | −1.33 | −3.34 | −4.67 |
Phe48A-Lys151B | 1.52 | −5.42 | −3.90 |
Gly49A-Val5B | 1.01 | −1.87 | −0.86 |
Gly49A-Gly148B | −0.62 | −2.36 | −2.97 |
Asp50A-Val5B | −0.22 | −2.65 | −2.87 |
Asn51A-Val7B | 0.62 | −3.02 | −2.40 |
Thr52A-Val7B | 0.03 | −2.04 | −2.02 |
Ile111A-Gly112B | −0.07 | −1.81 | −1.88 |
Ile111A-Ile149B | −0.42 | −1.94 | −2.36 |
Gly112A-Ile111B | −0.05 | −1.84 | −1.89 |
Gly112A-Gly148B | −3.45 | −1.57 | −5.02 |
Arg113A-Ile149B | −1.01 | −5.85 | −6.86 |
Val146A-Gly148B | 0.03 | −1.31 | −1.29 |
Gly148A-Gly49B | −0.67 | −2.49 | −3.16 |
Gly148A-Gly112B | −3.32 | −1.81 | −5.13 |
Ile149A-Phe48B | −3.85 | −6.17 | −10.02 |
Ile149A-Ile111B | −0.34 | −2.32 | −2.66 |
Ile149A-Arg113B | −0.51 | −5.39 | −5.89 |
Ala150A-Phe48B | −1.80 | −3.83 | −5.62 |
Lys151A-Phe48B | −0.52 | −5.83 | −6.34 |
Total | −13.55 | −74.10 | −87.65 |