Table 1 Distribution of 10367 SNPs on nine foxtail millet chromosomes. A summary of SNP pairs showing significant linkage disequilibrium (LD) and LD decay distance on each of the nine chromosomes is also shown.
Chromosome | Number of SNPs | Chromosome length (Mb) | SNP density (per Mb) | SNP pair in LD (p ≤ 0.05) | Average LD (r2) | LD decay distance (Kb) |
|---|---|---|---|---|---|---|
1 | 1236 | 42.0 | 29.4 | 21289 | 0.17 | 306 |
2 | 1216 | 49.1 | 24.8 | 16805 | 0.12 | 155 |
3 | 872 | 50.6 | 17.2 | 8466 | 0.09 | 121 |
4 | 970 | 40.1 | 24.2 | 14388 | 0.19 | 357 |
5 | 844 | 47.1 | 17.9 | 9524 | 0.14 | 350 |
6 | 923 | 35.9 | 25.7 | 7461 | 0.09 | 76 |
7 | 1171 | 35.6 | 32.9 | 13627 | 0.11 | 136 |
8 | 2153 | 40.6 | 53.0 | 28790 | 0.14 | 137 |
9 | 982 | 58.9 | 16.7 | 8136 | 0.10 | 204 |
