Table 2 Conserved domains and motifs on LusHSF proteins.

From: Genomic insights into HSFs as candidate genes for high-temperature stress adaptation and gene editing with minimal off-target effects in flax

LusHSF ID	Group	DBD	HR-A/B	NLS	NES	AHA1	AHA2	AHA3	AHA4	RD	NLS and NES domain sequences
LushsfA1a	A1a	39–134	141–233	236–253	436–450	—	—	—	—	—	NLS-SRRISESSKKRRLKQDGV; NES-PMENMDQLTQQMGLL
LushsfA1b	A1b	9–104	110–202	205–222	437–451	—	392–410	—	—	—	NLS-SRRIVGGTKKRRLPAHEG; NES-KVEGMNYLTEQMGLL
LushsfA1c	A1c	39–134	141–233	236–253	436–450	—	—	—	—	—	NLS-TRRISESSKKRRLKQDGV; NES-PMENMDQLTQQMGLL
LushsfA1d	A1d	43–138	147–239	242–259	449–463	—	—	—	—	—	NLS-NRRITETNKKRRLKQDRT; NES-KTEHVDQLTEQMGHL
LushsfA1f	A1f	43–138	147–239	242–259	449–463	—	—	—	—	—	NLS-NRRIAETNKKRRLKQDGT; NES-KSEHVDQLTEQMGHL
LushsfA2a	A2a	36–142	158–237	—	326–334	—	298–325	—	—	—	NES-QDLVDQMGFL
LushsfA2b	A2b	36–179	189–268	—	359–364	316–328	—	—	—	—	NES-QMGFL
LushsfA3a	A3a	68–186	193–260	264–273	—	—	—	—	—	—	NLS-TTRKKFIRHN
LushsfA3b	A3b	68–187	195–262	273–282	—	—	—	403–412	420–426	—	NLS-RTRKKFIRHN
LushsfA4a	A4a	6–118	123–202	206–225	396–410	336–372	376–393	—	—	—	NLS-RKRRLPRISCYDDPMLEDST; NES-NVNSLAGHIGPLTPA
LushsfA4b	A4b	6–118	126–205	206–225	386–400	327–363	368–383	—	—	—	NLS-RKRRLPRLGCIDDDPMKEDT; NES-SVNGLAGQVGPLTPA
LushsfA4c	A4c	6–118	123–202	206–225	—	—	—	—	—	—	NLS-RKRRLPRISCYDDPMLEDST
LushsfA4d	A4d	6–119	126–205	210–229	—	331–367	372–387	—	—	—	NLS-RKRRLPRLDCIDDDPMKEDT
LushsfA6a	A6a	38–139	144–225	227–249	362–380	—	—	—	—	—	NLS-HQKGIMRELENAITKKRRRRPID; NES-RNVDVLLEQLGFFLPPPY
LushsfA6b	A6b	36–137	142–223	225–237	356–373	325–338	—	—	—	—	NLS-HQKGIMRELENAITKKRRRRPID; NES-GNVDVLVEQLGFLDSDIM
LushsfA7a	A7a	34–135	158–239	241–251	356–373	335–247	—	—	—	—	NLS-QRKEKRKELEEALSKKRRRPID; NES-EDVNTLAEQLGYLSSSSP
LushsfA7b	A7b	34–135	159–240	242–263	360–377	339–351	—	—	—	—	NLS-QRKEKRKELEEALSKKRRRPIE; NES-EDVNTLAEQLGYLSSSSP
LushsfA7c	A7c	40–141	162–243	255–265	347–364	323–335	—	—	—	—	NLS-NNKRRRRRPIG; NES-EAVTALAEQLGYLPIRLK
LushsfA8a	A8a	10–110	137–208	209–216	—	—	—	—	—	—	NLS-SWRMAEPG
LushsfA8b	A8b	10–109	137–208	209–216	—	—	—	—	—	—	NLS-SWRMAEPG
LushsfA9a	A9a	128–231	249–342	—	—	403–431	436–456	—	—	—	—
LushsfA9b	A9b	120–223	243–336	—	—	—	—	—	—	—	—
LushsfB1a	B1a	1–100	165–213	—	—	—	—	—	—	236–244	—
LushsfB1c	B1c	1–100	173–222	273–283	245–253	—	—	—	—	247–253	NLS-GPRAKEIKICY
LushsfB2a	B2a	19–136	167–216	255–264	—	—	—	—	—	237–254	NLS-KKRGREEGGG
LushsfB2b	B2b	37–154	186–235	296–305	——	—	—	—	—	279–295	NLS-KRARIEEEEE
LushsfB2d	B2d	82–199	229–278	339–348	—	—	—	—	—	321–338	NLS-KRVRIDEEEE
LushsfB4a	B4a	27–126	221–267	357–363	—	—	—	—	—	341–356	NLS-NNHNHN
LushsfB4b	B4b	30–133	191–237	293–297	—	—	—	—	—	275–292	NLS-KKRQL
LushsfB4c	B4c	27–126	216–262	356–359	381–394	—	—	—	—	337–355	NLS-HHHN; NES-SSKSHRLVLEKDDL
LushsfB5a	B5a	25–136	156–196	199–204	—	—	—	—	—	—	NLS-KNRRTC
LushsfB5b	B5b	26–137	157–197	—	—	—	—	—	—	—	—
LushsfC1a	C1a	20–117	134–197	198–212	—	—	—	—	—	—	NLS-KLDHRKKRCLMTSIS
LushsfC1b	C1b	15–113	129–192	193–207	—	—	—	—	—	—	NLS-KLDHRKKRCLMALVS

DBD: DNA-bind domain; HR-A/B: heptad repeat A (N-terminus) or B (C-terminus) domain; NLS: nuclear localization signal; NES: nuclear export signal; AHA: aromatic and hydrophobic amino acid residues embedded in an acidic context; RD: repressor domain.

Back to article page

Table 2 Conserved domains and motifs on LusHSF proteins.

Search

Quick links