Table 4 Details of promoter analysis in the 1000 bp upstream sequence of the LusHSF genes. Position of first nucleotide of putative TSS/TATA box/Enhancer from the 5’ end of the upstream sequence analyzed and not from the start codon. NP- No prediction; PRECON70#- PRECONSCRHSP70.
Gene_ID | Prom_len | TSSP (SOFTBERRY) predictions* | Number of cis-elements (PlantCARE) | Number of cis-elements (PLACE | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TSS | TATA box | Enhancer | ABRE | CCAAT-box | DRE | HSE | LTR | MBS | TC-rich repeats | ABRE | MYB | LTRE | PRECON70# | CRT/DRE/CBF | ||
LushsfA1a | 1000 | NP | — | — | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 13 | 1 | 1 | 3 |
LushsfA1b | 1000 | 749 | 725 | — | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 7 | 14 | 5 | 1 | 5 |
LushsfA1c | 1000 | 550 | 512 | — | 2 | 0 | 0 | 1 | 2 | 0 | 1 | 1 | 14 | 2 | 0 | 0 |
LushsfA1d | 1000 | 931 | 916 | — | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 2 | 15 | 2 | 1 | 2 |
LushsfA1f | 1000 | 450 | 415 | — | 0 | 0 | 0 | 2 | 0 | 1 | 1 | 1 | 21 | 4 | 2 | 2 |
LushsfA2a | 1000 | 892 | 855 | 761 | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 18 | 0 | 0 | 2 |
LushsfA2b | 1000 | NP | — | — | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 18 | 3 | 2 | 3 |
LushsfA3a | 1000 | 940 | 927 | 869 | 2 | 0 | 0 | 0 | 0 | 2 | 1 | 3 | 24 | 3 | 2 | 6 |
LushsfA3b | 1000 | 941 | 927 | 869 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 24 | 2 | 1 | 2 |
LushsfA4a | 1000 | NP | — | — | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 15 | 0 | 2 | 0 |
LushsfA4b | 1000 | NP | — | — | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 15 | 1 | 2 | 6 |
LushsfA4c | 1000 | NP | — | — | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 16 | 0 | 1 | 1 |
LushsfA4d | 1000 | 292 | 256 | — | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 0 | 18 | 1 | 3 | 6 |
LushsfA6a | 1000 | 895; 461 | 860; 425 | 928 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 1 | 11 | 0 | 3 | 8 |
LushsfA6b | 1000 | 905 | 868 | 926 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 17 | 1 | 2 | 7 |
LushsfA7a | 1000 | 828 | 795 | 155; 874 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 3 | 1 | 0 | 0 |
LushsfA7b | 1000 | 822 | 789 | 861 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 19 | 2 | 0 | 4 |
LushsfA7c | 748 | 438 | 412 | 696 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 11 | 0 | 1 | 1 |
LushsfA8a | 1000 | NP | — | — | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 4 | 12 | 3 | 2 | 3 |
LushsfA8b | 1000 | NP | — | — | 0 | 0 | 0 | 2 | 0 | 6 | 0 | 2 | 27 | 2 | 2 | 11 |
LushsfA9a | 1000 | 633 | 616 | — | 4 | 0 | 0 | 6 | 1 | 1 | 1 | 4 | 18 | 2 | 3 | 2 |
LushsfA9b | 939 | NP | — | — | 4 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 25 | 1 | 2 | 2 |
LushsfB1a | 1000 | 607; 192 | 575; 160 | 615 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 14 | 1 | 1 | 0 |
LushsfB1c | 1000 | 626; 175 | 592; 156 | 632 | 0 | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 9 | 1 | 4 | 0 |
LushsfB2a | 1000 | NP | — | — | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 9 | 4 | 0 | 3 |
LushsfB2b | 1000 | 578 | 540 | 582 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | 3 | 12 | 2 | 0 | 0 |
LushsfB2d | 1000 | 425 | 395 | 231 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 7 | 0 | 2 | 0 |
LushsfB4a | 1000 | 223 | 203 | 922; 315 | 0 | 0 | 0 | 2 | 2 | 0 | 2 | 0 | 11 | 3 | 0 | 0 |
LushsfB4b | 1000 | NP | — | — | 0 | 0 | 1 | 0 | 1 | 3 | 0 | 0 | 31 | 3 | 1 | 5 |
LushsfB4c | 287 | 209 | — | — | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
LushsfB5a | 769 | 723 | 697 | — | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 1 |
LushsfB5b | 1000 | 945 | 931 | — | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 24 | 1 | 1 | 3 |
LushsfC1a | 1000 | 948 | 913 | — | 2 | 0 | 0 | 1 | 1 | 1 | 0 | 6 | 10 | 4 | 1 | 1 |
LushsfC1b | 1000 | 925; 108 | 892; 70 | 936 | 2 | 0 | 0 | 0 | 1 | 3 | 1 | 3 | 17 | 2 | 1 | 4 |
