Table 1 Features of the L. donovani assembled genomes and sequencing strategies used.
From: Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation
Features | Strain BPK282A1a | LD-974b | HU3c |
|---|---|---|---|
Chromosomes (scaffolds) | 36 | 36 | 36 |
Number of contigs | 2154 | 1100 | 36 |
Annotated genes | 8195 | 8474 | 8595 |
Annotated CDS | 8070 | 8336d | 8405 |
Annotated pseudogenes | 13 | NAe | 47 |
Annotated structural genes | 112 | 138 | 143 |
Number of gaps | 2118 | 1064 | 0 |
Number of Ns | 1192833 | NA | 0 |
Haploide genome size (bp) | 31252135 | 27848322 | 33035865 |
Illumina coverage median | 52 | ~110 | 105 |
454 GS FLX Titanium coverage median | 22 | — | — |
PacBio coverage median | — | — | 89 |
