Table 1 ALDH gene sequences retrieved from BRAD. Gene properties such as chromosome location, gene length, locus, duplication events were studied in the B. rapa ALDH genes.
Family | Gene Id | Gene Name | Chr | Gene length | Sub-genome | Signature (Locus) | Tandem duplication | Block duplication |
|---|---|---|---|---|---|---|---|---|
Family 2 | Br001952 | BrALDH2C1 | A03 | 1.506kbp | MF2 | 19589691–19593716 | − | + |
|  | Br018090 | BrALDH2B1 | A06 | 1.620kbp | LF | 9850859–9853635 | − | + |
|  | Br019522 | BrALDH2B2 | A06 | 1.605kbp | MF2 | 12885987–12888783 | + | + |
|  | Br016330 | BrALDH2B3 | A08 | 1.614kbp | MF1 | 17147648–17150144 | − | + |
|  | Br024619 | BrALDH2B4 | A09 | 1.611kbp | LF | 25223817–25226516 | − | + |
Family 3 | Br036943 | BrALDH3H1 | Scaffold (000123) | 0.858kbp | LF | 179657–180927 | − | + |
|  | Br014022 | BrALDH3H2 | A08 | 1.449kbp | MF1 | 4482093–4484928 | − | + |
|  | Br032205 | BrALDH3H3 | A05 | 1.449kbp | MF2 | 13044509–13047276 | − | + |
|  | Br011511 | BrALDH3I1 | A01 | 1.671kbp | LF | 1876841–1879683 | − | − |
|  | Br011674 | BrALDH3F1 | A01 | 1.446kbp | LF | 1127128–1129753 | − | + |
|  | Br017753 | BrALDH3F2 | A03 | 1.455kbp | MF1 | 30292563–30294896 | − | + |
|  | Br010553 | BrALDH3F3 | A08 | 1.404kbp | MF2 | 14368085–14370471 | − | + |
Family 5 | Br035119 | BrALDH5F1 | A07 | 1.593kbp | LF | 25538907–25543424 | − | + |
Family 6 | Br037214 | BrALDH6B1 | A09 | 1.584kbp | MF1 | 5026270–5030088 | − | − |
Family 7 | Br037964 | BrALDH7B1 | A06 | 0.693kbp | LF | 392200–393521 | − | + |
|  | Br030906 | BrALDH7B2 | A08 | 1.515kbp | MF1 | 691355–694327 | − | + |
Family 10 | Br019528 | BrALDH10A1 | A06 | 1.512kbp | MF2 | 12530247–12533712 | + | + |
|  | Br003781 | BrALDH10A2 | A07 | 1.506kbp | MF2 | 15030838–15033835 | − | + |
Family 11 | Br007862 | BrALDH11A1 | A09 | 1.491kbp | LF | 31293168–31296421 | − | + |
|  | Br032110 | BrALDH11A2 | A04 | 1.491kbp | MF1 | 10851870–10854079 | − | + |
Family 12 | Br010097 | BrALDH12A1 | A06 | 1.644kbp | LF | 19386769–19389923 | − | + |
|  | Br029253 | BrALDH12A2 | A02 | 0.504kbp | MF1 | 26300899–26303476 | − | + |
Family 22 | Br029596 | BrALDH22A1 | LF | 1.782kbp | LF | 23082205–23085442 | − | − |
