Table 2 Most differentially expressed known miRNAs in the rainbow trout eggs exposed to ionizing radiation before activation (175Gy, 350 Gy) and after androgenetic activation (Andro 1n).
From: Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs
Exp. variant | miR name | miRNA sequence | Log2 (fold_change) | induced | repressed |
---|---|---|---|---|---|
175 Gy | ssa-miR-30b-5p | UGUAAACAUCCCCGACUGGAAGCG | −6.86 | + | |
ssa-miR-22a-3p | AAGCUGCCAGCCGAAGAACUGC | 5.83 | + | ||
ssa-miR-22a-3p | AAGCUGCCAGCUGAAGAAU | 5.7 | + | ||
ssa-miR-21b-5p | UAGCUUAUCAGACUGAUGUUG | −6.35 | + | ||
ssa-miR-10b-5p | UACCCUGUAGAACCGAAUUUGUGA | −6.9 | + | ||
ssa-let-7b-5p | UGAGGUAGUAGGUUGUGUGA | 5.17 | + | ||
ssa-miR-10b-5p | UACCCUGUAGAACCGAAUU | −5.72 | + | ||
ssa-miR-146a-5p | UGAGAACUGAAUUCCGUAGAUGG | −5.63 | + | ||
ssa-miR-101a-3p | UACAGUACUGUGAUAACUGAAU | −6.86 | + | ||
ssa-miR-206–3p | UGGAAUGUAAGGAAGUGUG | −6.86 | + | ||
350 Gy | ssa-miR-146a-5p | UGAGAACUGAAUUCCAUAGAUU | 5.28 | + | |
ssa-miR-206-3p | UGGAAUGUAAGGAAGUGUGUGAU | −6.33 | + | ||
ssa-miR-202-3p | UUCCUAUGCAUAUACCCCUUC | 4.96 | + | ||
ssa-miR-148a-3p | UCAGUGCAUCACAGAACUUUGUU | −6.16 | + | ||
ssa-let-7b-5p | UGAGGUAGUAGGUUGUGUGA | 4.85 | + | ||
ssa-let-7b-5p | UGAGGUAGUAGGUUGUGUGGUUC | −6.07 | + | ||
ssa-miR-199a-3p | ACAGUAGUCUGCACAUUGGUG | −5.02 | + | ||
ssa-miR-146d-5p | UGAGAACUGAAUUCCAUGGGUU | −5.98 | + | ||
ssa-miR-22a-3p | AAGCUGCCAGCCGAAGAACUGC | 4.79 | + | ||
Andro 1n | ssa-let-7f-5p | UGAGGUAGUAGAUUGUAUAGUU | 3.79 | + | |
ssa-miR-133a-3p | UUUGGUCCCCUUCAACCAGCUGU | 3.87 | + | ||
ssa-miR-133a-3p | UUGGUCCCCUUCAACCAGCUGU | 3.64 | + | ||
ssa-miR-206-3p | UGGAAUGUAAGGAAGUGUGUGA | 3.68 | + | ||
ssa-miR-133a-3p | UUGGUCCCCUUCAACCAGCUGUU | 4.17 | + | ||
ssa-let-7g-5p | UGAGGUAGUAGUUUGUACAGUU | 3.46 | + | ||
ssa-miR-133b-3p | UUUGGUCCCCUUCAACCAGCUGC | 3.99 | + | ||
ssa-let-7g-5p | UGAGGUAGUAGUUUGUACAGU | 3.73 | + | ||
ssa-let-7g-5p | UGAGGUAGUAGUUUGUACAGUC | 3.97 | + | ||
Ssa-let-7f-5p | UGAGGUAGUAGAUUGUAUAGUC | 4.00 | + | ||
ssa-miR-148a-3p | UCAGUGCACUACAGAACUUUGU | 3.08 | + |