Figure 10 | Scientific Reports

Figure 10

From: Computational analysis of single-cell transcriptomics data elucidates the stabilization of Oct4 expression in the E3.25 mouse preimplantation embryo

Figure 10

Simplified spatial-temporal mouse embryo model. 3D embryo model based on hexagonal close-packing for embryos with 33 and 34 cells, and layer reconstruction of: (A) 33-cell and (B) 34-cell embryos. Packing of the: (C) 33-cell and (D) 34-cell embryos. (E) 5-cell and (F) 6-cell kernels formed of cells without external contacts. The transparent and solid spheres represent external and kernel cells, respectively. (G) Temporal representation of ICM cells from blastocysts at different number-of-cell stages and for different cell types. The gene expression of each cell is represented by a pie-chart of the expression of Pou5f1, Fgf4, Ctnnb1 and Dppa2. The gene expression is represented in log2 scale. Higher gene expression corresponds to redder colour, and lower expression to bluer colour. The genes and their corresponding positions in the pie-chart are represented by the black and white pie-chart in the bottom. The semicircle of grey circles surrounding the top part of each group of single cells represents the blastocyst outer cells.

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