Table 1 Origin of tilapia samples used in ddRAD analysis, SNP validation by KASP and COI sequencing.
Species | Acronym | Strain/Population | ddRAD | KASP | COI | Sampling origin |
|---|---|---|---|---|---|---|
O. niloticus niloticus | Oni | Stirling | 6 | 14 | 5 | Lake Manzala, Egypt |
Kpandu | 12 | 8 | 2 | Ghana | ||
Nyinuto | 12 | 8 | 2 | Ghana | ||
O. niloticus cancellatus | Hora | 13 | 0 | 2 | Ethiopia | |
Koka | 12 | 0 | 0 | Ethiopia | ||
Metahara | 8 | 0 | 0 | Ethiopia | ||
O. mossambicus | Omo | Stirling | 5 | 7 | 3 | Zimbabwe |
Natal | 10 | 8 | 1 | South Africa | ||
Singapore | 0 | 7 | 0 | Unknown | ||
Eastern Cape | 0 | 0 | 2 | South Africa | ||
Western Cape | 0 | 0 | 1 | South Africa | ||
O. aureus | Oau | Stirling | 5 | 8 | 1 | Lake Manzala, Egypt |
Ein Feskha | 10 | 15 | 2 | Israel | ||
O. karongae | Oka | Stirling | 5 | 0 | 3 | Lake Malawi |
O. u. hornorum | Oho | Israel | 5 | 16 | 2 | Tanzania |
Stirling | 0 | 0 | 1 | Unknown | ||
T. zillii | Tzi | Stirling | 5 | 0 | 3 | Lake Manzala, Egypt |
Ghana | 5 | 0 | 3 | Ghana | ||
S. galilaeus | Sga | Israel | 5 | 0 | 3 | Israel |
O. andersonii | Oan | Itezhi-tezhi | 6 | 0 | 2 | Zambia |
O. macrochir | Oma | Itezhi-tezhi | 4 | 0 | 2 | Zambia |
S. melanotheron | Sme | Ghana | 4 | 0 | 3 | Ghana |
Total | 132 | 91 | 43 |
