Table 1 List of oligonucleotide probes.

From: Efficient and specific oligo-based depletion of rRNA

50 bp probe

Sequence

1_28Sα_rRNA_S

CTCCGTGGCTAAGGAATGTAATGGGCTGACACCTTCTTTGGCTCAATACT

2_28Sα_rRNA_M

AGGGAAACTTCGACGTGAACCAGCTACTAGGTGGTTCGATGAGTCTTTCG

3_28Sα_rRNA_E

AGGGAGANGTGCGCCGACCACCTTCACTTTCCTAACAAAACGGTGTAACG

4_28Sβ_rRNA_S

ACAACACACCAGAAGGAGGTTAGTAGATACGGCTCGGGAGGGTAGCCTTC

5_28Sβ_rRNA_M

CTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGAC

6_28Sβ_rRNA_E

ATTTACGCTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTT

7_18S_rRNA_S

ATGTATTAGCTTGGCGTTTCGCCAAGTTATCCAGTAATGCGGAGACCGCA

8_18S_rRNA_M

CACCCTGTCCGGATCTGGTAAAGTTCCCCGTGTTGAGTCAAATTAAACCG

9_18S_rRNA_E

TACGAGACATTCCTCGTTGCGCGACCAATAATTGCAATACTCGGTCCCAA

10_5.8S_rRNA

CTTATCGCACTTTGCTGCGTTCTTCAACGAAATAGGAAGCCAAGTCATCC

11_5S_rRNA

CTAACGAGGCCTGTGGCCGCTTAACTTCACAAATCGGACGGGATATGGTG

12_18S_rRNA

AGTGATTCTGAGGCATGCATGGCTAAGTCCTTGAAACAAGCATATGACTA