Table 1 Phylogenetic characteristics of isolates based on the 16S rRNA gene sequence.
Isolates No. | Source of isolation (Locality of source) | Isolation media | Closest taxon | Closest GeneBank relative | Response to lightb | ||
---|---|---|---|---|---|---|---|
Genus/Species | Order | Accession Noa | Similarity (%) | ||||
16 | Biotope (Kanagawa pref.) | LB | Bacillus megaterium | Bacillales | AY030338 | 99 | + |
199 | Paddy field (Ibaraki pref.) | 1/10 LB | Bacillus megaterium | EU880506 | 99 | + | |
295 | Forest soil (Kanagawa pref.) | 1/10 LB | Agromyces ulmi | Micrococcales | AY427830 | 98 | ++ |
296 | 1/10 LB | Bacillus subtilis | Bacillales | FJ483514 | 99 | ++ | |
423 | Bran pickled (Kanagawa pref.) | R2A | Brevibacterium linens | Micrococcales | DQ361016 | 98 | ++ |
459 | Snow (Yamanashi pref.) | 1/10 LBG | Sphingobacterium siyangense | Sphingobacteriales | EU646272 | 99 | ++ |
496 | Soil of residential land (Chiba pref.) | 1/10 LBG | Paeniglutamicibacter sulfureus | Micrococcales | AB046358 | 99 | ++ |
504 | 1/10 LBG | Paeniglutamicibacter sulfureus | X83409 | 99 | ++ | ||
514 | 1/10 LBG | Paeniglutamicibacter sulfureus | EF154245 | 99 | ++ | ||
516 | 1/10 LBG | Microbacterium phyllosphaerae | AJ277840 | 100 | + | ||
526 | 1/10 LBG | Microbacterium foliorum | EU714341 | 100 | + | ||
527 | 1/10 LBG | Paeniglutamicibacter sulfureus | AB046358 | 99 | ++ | ||
550 | 1/10 LBG | Paeniglutamicibacter sulfureus | X83409 | 99 | ++ | ||
647 | R2A | Paenibacillus alvei | Bacillales | AB377108 | 99 | + | |
732 | Biotope (Hokkaido) | 1/10 LB | Leifsonia shinshuensis | Micrococcales | DQ232614 | 99 | ++ |
742 | Paddy field (Ibaraki pref.) | 1/10 LB | Sinomonas atrocyanea | X80746 | 99 | ++ | |
905 | Cattle manure (Iwate pref.) | 1/10 LB | Glutamicibacter arilaitensis | EU834260 | 99 | ++ | |
919 | 1/10 LB | Simplicispira metamorpha | Burkholderiales | Y18618 | 96 | + | |
943 | 1/10 LBG | Glutamicibacter nicotianae | Micrococcales | EU857420 | 99 | ++ | |
951 | 1/10 LBG | Paenarthrobacter nicotinovorans | AB363933 | 99 | + | ||
1031 | 1/10 LBG | Simplicispira metamorpha | Burkholderiales | Y18618 | 96 | + | |
1039 | 1/10 LBG | Microbacterium natoriense | Micrococcales | AY566291 | 99 | ++ | |
1052 | 1/10 LBG | Microbacterium natoriense | AY566291 | 98 | ++ | ||
1077 | 1/10 LBG | Microbacterium natoriense | AY566291 | 99 | ++ |