Table 1 Relative abundance of OTUs found the fecal microbiota of the different animals analyzed throughout this study.
From: Comparative analysis of the fecal microbiota from different species of domesticated and wild suids
Genera | Relative abundance (%) | P value* | ||||
|---|---|---|---|---|---|---|
SPA Warthog | AFR Warthog | AFR pig | COM pig | SPF pig | ||
Family | Relative abundance (%) | P value* | ||||
SPA Warthog | AFR Warthog | AFR pig | COM pig | SPF pig | ||
Genera | Relative abundance (%) | P value* | ||||
SPA Warthog | AFR Warthog | AFR pig | COM pig | SPF pig | ||
Bacteroidetes | 23.96 | 36.85 | 31.77 | 40.11 | 29.10 | <0.05 |
Firmicutes | 60.06 | 51.95 | 54.71 | 50.65 | 66.93 | <0.01 |
Proteobacteria | 6.94 | 3.18 | 5.44 | 3.12 | 2.41 | <0.05 |
Spirochaetes | 4.16 | 2.64 | 3.56 | 2.47 | 0.00 | <0.001 |
Tenericutes | 2.20 | 0.26 | 0.09 | 0.13 | 0.36 | <0.001 |
Verrucomicrobia | 0.22 | 2.04 | 1.08 | 0.90 | 0.18 | <0.001 |
Acidaminococcaceae | 0 | 5.06 | 1.79 | 3.28 | 1.07 | <0.001 |
Anaeroplasmataceae | 1.18 | 0 | 0 | 0 | 0 | <0.05 |
Bacillaceae 1 | 0 | 0.24 | 1.41 | 0 | 0 | <0.001 |
Bacteroidaceae | 2.84 | 0 | 2.03 | 1.2 | 5.18 | <0.001 |
Bdellovibrionaceae | 1.92 | 0.58 | 0.49 | 0.57 | 1.15 | <0.01 |
Enterobacteriaceae | 0 | 0 | 2.83 | 0 | 0 | <0.001 |
Erysipelotrichaceae | 1.58 | 2.11 | 1.11 | 0.61 | 1.24 | <0.001 |
Flavobacteriaceae | 0.72 | 1.64 | 1.16 | 0.91 | 0 | <0.001 |
Lachnospiraceae | 16.56 | 19.93 | 16.73 | 14.13 | 14.1 | <0.05 |
Lactobacillaceae | 0 | 0 | 1.21 | 0.5 | 0 | <0.001 |
Marinilabiaceae | 0 | 1.61 | 0.39 | 0.7 | 0 | <0.001 |
Peptostreptococcaceae | 1.84 | 0.56 | 0.26 | 0 | 0.32 | <0.05 |
Planctomycetaceae | 0 | 0.95 | 1.09 | 0.73 | 0 | <0.001 |
Planococcaceae | 0 | 0.41 | 0.51 | 1.36 | 0 | <0.005 |
Porphyromonadaceae | 4.78 | 2.63 | 7.63 | 5.07 | 3.45 | 0.54 |
Prevotellaceae | 9.68 | 14.61 | 14.25 | 24.04 | 17.59 | <0.001 |
Rhodospirillaceae | 1.8 | 0 | 0 | 0 | 0 | <0.001 |
Rikenellaceae | 0 | 0 | 0 | 0 | 2.74 | <0.001 |
Ruminococcaceae | 21.72 | 13.88 | 20.41 | 21.42 | 36.89 | <0.001 |
Sphingobacteriaceae | 0 | 0 | 0.45 | 1.51 | 0 | <0.001 |
Spirochaetaceae | 4.16 | 2.64 | 3.06 | 2.44 | 0 | <0.001 |
Subdivision5_genera_incertae_sedis | 0 | 2.02 | 0.45 | 0.6 | 0 | <0.001 |
Veillonellaceae | 0 | 0.79 | 1.37 | 1.01 | 0.43 | 0.63 |
Verrucomicrobiaceae | 0 | 0 | 1.03 | 0 | 0 | <0.001 |
Acetanaerobacterium | 0.42 | 0 | 0 | 0.97 | 2.68 | <0.001 |
Akkermansia | 0 | 0 | 1.02 | 0.23 | 0 | <0.001 |
Alistipes | 0 | 0 | 0 | 0 | 2.73 | <0.001 |
Alloprevotella | 0 | 0.81 | 1.51 | 6.72 | 0 | <0.001 |
Anaeroplasma | 1.18 | 0 | 0 | 0 | 0 | <0.001 |
Bacillus | 0 | 0.24 | 1.41 | 0 | 0 | <0.001 |
Bacteroides | 2.84 | 0 | 2 | 1.2 | 5.18 | <0.001 |
Barnesiella | 1.18 | 1.28 | 5.31 | 2.6 | 0.78 | <0.001 |
Clostridium IV | 2.06 | 0 | 2.08 | 1.62 | 2.22 | <0.001 |
Clostridium XI | 1.84 | 0.56 | 0.26 | 0 | 0.32 | <0.05 |
Clostridium XlVa | 6.42 | 7.01 | 7.81 | 4.89 | 3.79 | 0.1 |
Escherichia/Shigella | 0 | 0 | 2.71 | 0 | 0 | <0.001 |
Faecalibacterium | 0 | 1.31 | 0 | 1.4 | 2.07 | <0.05 |
Lachnospiracea_incertae_sedis | 2.24 | 1.93 | 4.3 | 3.71 | 2.72 | <0.1 |
Lactobacillus | 0 | 0 | 1.2 | 0.49 | 0 | <0.001 |
Oscillibacter | 0 | 0.96 | 2.17 | 3.29 | 4.64 | <0.001 |
Paludibacter | 1.56 | 0 | 0.67 | 0.35 | 0 | <0.001 |
Paraprevotella | 1.68 | 3.03 | 0.71 | 1.12 | 1.2 | <0.001 |
Phascolarctobacterium | 0 | 4.92 | 1.66 | 3.25 | 1.05 | <0.001 |
Prevotella | 7.34 | 10.08 | 9.89 | 15.12 | 16.03 | 0.58 |
Roseburia | 1.4 | 3.54 | 0.53 | 1.12 | 2.54 | <0.01 |
Ruminococcus | 4.34 | 1.9 | 1.33 | 2.32 | 3.84 | <0.001 |
Rummeliibacillus | 0 | 0 | 0.11 | 1.32 | 0 | 0.57 |
Saccharofermentans | 0 | 1.25 | 0 | 0 | 0 | <0.001 |
Sphaerochaeta | 1.08 | 0 | 0 | 0.56 | 0 | <0.001 |
Subdivision5_genera_incertae_sedis | 0 | 2.02 | 0.45 | 0.6 | 0 | <0.001 |
Treponema | 3.08 | 2.36 | 2.9 | 1.89 | 0 | <0.001 |
Vampirovibrio | 1.92 | 0.59 | 0.49 | 0.57 | 1.15 | <0.05 |
