Table 4 The relapse-associated SNPs for patients with HSCT.
SNP | Genome position1 (bp) | Gene/location | Source2 | Disease/Status | Number of patients (%) | P* | ||
---|---|---|---|---|---|---|---|---|
Donor genotype | ||||||||
rs111394117 | 32219436 | NOTCH4, intron | rs394657 | AML | A/A | A/G | G/G | 0.0166 |
Ā | Ā | Ā | Ā | Relapse | 1 (6.7) | 2 (13.3) | 12 (80.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 0 (0.0) | 40 (100.0) | Ā |
rs213210 | 33208047 | RING1, promoter | rs107822 | ALL | A/A | A/G | G/G | 0.0285 |
Ā | Ā | Ā | Ā | Relapse | 3 (25.0) | 8 (66.7) | 1 (8.3) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 10 (25.0) | 12 (30.0) | 18 (45.0) | Ā |
Recipient genotype | ||||||||
rs79327197 | 33010635 | HLA-DOA, | rs429916 | ALL | A/A | A/G | G/G | 0.0150 |
Ā | Ā | promoter | Ā | Relapse | 10 (66.7) | 5 (33.3) | 0 (0.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 35 (94.6) | 2 (5.4) | 0 (0.0) | Ā |
rs2009658 | 31538244 | 1.6ākb telomeric of | rs915654 | ALL | C/C | C/G | G/G | 0.0148 |
Ā | Ā | LTA | Ā | Relapse | 12 (80.0) | 1 (6.7) | 2 (13.3) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 25 (67.6) | 12 (32.4) | 0 (0.0) | Ā |
rs213210 | 33208047 | RING1, promoter | rs107822 | AML | A/A | A/G | G/G | 0.0444 |
Ā | Ā | Ā | Ā | Relapse | 2 (8.3) | 13 (54.2) | 9 (37.5) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 20 (34.5) | 26 (44.8) | 12 (20.7) | Ā |
rs17220087 | 32813299 | HLA-DOB, intron | rs2071479 | AML | A/A | A/C | C/C | 0.0465 |
Ā | Ā | Ā | Ā | Relapse | 0 (0.0) | 0 (0.0) | 25 (100.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 8 (14.3) | 48 (85.7) | Ā |
Ā | Ā | Ā | Ā | ALL | A/A | A/C | C/C | 0.0311 |
Ā | Ā | Ā | Ā | Relapse | 0 (0.0) | 3 (20.0) | 12 (80.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 1 (2.6) | 37 (97.4) | Ā |
rs17213693 | 32813344 | HLA-DOB, intron | rs2071479 | AML | C/C | C/G | G/G | 0.0465 |
Ā | Ā | Ā | Ā | Relapse | 0 (0.0) | 0 (0.0) | 25 (100.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 8 (14.3) | 48 (85.7) | Ā |
Ā | Ā | Ā | Ā | ALL | C/C | C/G | G/G | Ā |
Ā | Ā | Ā | Ā | Relapse | 0 (0.0) | 3 (20.0) | 12 (80.0) | 0.0311 |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 1 (2.6) | 37 (97.4) | Ā |
rs2070120 | 32813137 | HLA-DOB, 3ā²UTR | rs2071479 | ALL | A/A | A/G | G/G | 0.0311 |
Ā | Ā | Ā | Ā | Relapse | 0 (0.0) | 3 (20.0) | 12 (80.0) | Ā |
Ā | Ā | Ā | Ā | Non-relapse | 0 (0.0) | 1 (2.6) | 37 (97.4) | Ā |