Table 2 Average relative abundances of main microbial groups (phylum, family, genus).
From: Diversity of vaginal microbiome and metabolome during genital infections
Level | Group | Relative abundance | P-value | |||||||
---|---|---|---|---|---|---|---|---|---|---|
HC (%) | CT (%) | VVC (%) | BV (%) | Overalla | CT vs. HCb | VVC vs. HCb | BV vs. HCb | |||
Phylum | ↓ | Firmicutes | 92.41 | 89.78 | 79.22 | 60.61 | <0.001 | — | 0.004 | <0.001 |
↑ | Actinobacteria | 3.39 | 5.62 | 12.02 | 18.38 | <0.001 | — | <0.001 | <0.001 | |
↑ | Bacteroidetes | 2.71 | 2.99 | 5.02 | 11.51 | <0.001 | — | 0.019 | <0.001 | |
↑ | Fusobacteria | 0.22 | 0.42 | 0.54 | 7.87 | 0.003 | — | — | <0.001 | |
↑ | Proteobacteria | 0.57 | 0.60 | 2.23 | 0.41 | 0.030 | — | 0.013 | — | |
Family | ↓ | Lactobacillaceae | 79.19 | 67.50 | 56.75 | 18.83 | <0.001 | — | 0.004 | <0.001 |
↑ | Lachnospiraceae | 3.16 | 8.10 | 6.61 | 13.67 | 0.003 | <0.001 | 0.007 | 0.007 | |
↑ | Bifidobacteriaceae | 2.93 | 4.17 | 9.56 | 11.82 | <0.001 | 0.044 | <0.001 | <0.001 | |
= | Ruminococcaceae | 5.22 | 6.59 | 6.29 | 6.21 | — | — | — | — | |
↑ | Veillonellaceae | 0.74 | 3.72 | 2.42 | 10.91 | <0.001 | 0.031 | 0.004 | <0.001 | |
↑ | Prevotellaceae | 1.16 | 1.60 | 3.76 | 9.15 | <0.001 | — | 0.002 | <0.001 | |
↑ | Coriobacteriaceae | 0.32 | 1.30 | 2.29 | 5.96 | <0.001 | 0.031 | <0.001 | <0.001 | |
↑ | Leptotrichiaceae | 0.20 | 0.41 | 0.53 | 7.77 | 0.002 | — | — | <0.001 | |
= | Uncl. Clostridiales | 1.66 | 1.56 | 1.44 | 1.58 | — | — | — | — | |
↑ | Tissierellaceae | 1.14 | 0.29 | 1.23 | 3.04 | <0.001 | — | 0.044 | <0.001 | |
↑ | Aerococcaceae | 0.03 | 0.24 | 1.51 | 2.07 | <0.001 | 0.034 | — | <0.001 | |
↑ | Clostridiaceae | 0.19 | 0.69 | 0.36 | 2.17 | <0.001 | 0.009 | — | <0.001 | |
= | Bacteroidaceae | 0.69 | 0.91 | 0.81 | 0.86 | — | — | — | — | |
= | Streptococcaceae | 0.42 | 0.50 | 1.05 | 0.55 | — | — | — | — | |
= | Pasteurellaceae | 0.03 | 0.10 | 1.46 | 0.02 | — | — | — | — | |
= | Porphyromonadaceae | 0.38 | 0.13 | 0.09 | 0.83 | — | — | — | — | |
↑ | Gemellaceae | 0.06 | 0.06 | 0.82 | 0.28 | 0.012 | — | 0.013 | 0.005 | |
↑ | Actinomycetaceae | 0.06 | 0.09 | 0.10 | 0.53 | 0.010 | — | 0.029 | 0.006 | |
↑ | Peptostreptococcaceae | 0.04 | 0.01 | 0.08 | 0.64 | 0.011 | — | 0.017 | 0.002 | |
Genus | ↓ | Lactobacillus | 79.16 | 67.45 | 56.69 | 18.80 | <0.001 | — | 0.004 | <0.001 |
↑ | Gardnerella | 2.72 | 3.65 | 7.68 | 11.44 | <0.001 | — | 0.003 | <0.001 | |
↑ | Prevotella | 1.16 | 1.60 | 3.76 | 9.15 | <0.001 | — | 0.002 | <0.001 | |
↑ | Megasphaera | 0.06 | 2.97 | 1.04 | 8.64 | <0.001 | 0.001 | 0.036 | <0.001 | |
↑ | Roseburia | 1.09 | 4.42 | 3.51 | 3.51 | <0.001 | <0.001 | <0.001 | 0.031 | |
↑ | Sneathia | 0.18 | 0.41 | 0.53 | 7.76 | <0.001 | 0.020 | — | <0.001 | |
= | Shuttleworthia | 0.03 | 0.54 | 0.31 | 7.48 | — | — | — | — | |
↑ | Faecalibacterium | 1.49 | 2.31 | 2.14 | 2.09 | 0.027 | 0.003 | 0.041 | — | |
↑ | Atopobium | 0.17 | 1.00 | 1.94 | 4.92 | <0.001 | 0.024 | 0.001 | <0.001 | |
↑ | Ruminococcaceae (other) | 1.35 | 1.95 | 1.86 | 1.81 | 0.023 | 0.003 | 0.041 | — | |
= | Uncl. Clostridiales | 1.66 | 1.56 | 1.44 | 1.58 | — | — | — | — | |
= | Uncl. Ruminococcaceae | 1.08 | 1.03 | 1.02 | 1.03 | — | — | — | — | |
↑ | Aerococcus | 0.03 | 0.24 | 1.50 | 2.06 | <0.001 | 0.021 | — | <0.001 | |
↑ | Dialister | 0.37 | 0.56 | 0.78 | 2.02 | <0.001 | 0.011 | <0.001 | <0.001 | |
↑ | Clostridium | 0.16 | 0.65 | 0.32 | 2.14 | <0.001 | 0.008 | — | <0.001 | |
↑ | Bacteroides | 0.69 | 0.91 | 0.81 | 0.86 | — | — | — | — | |
↑ | Blautia | 0.35 | 0.91 | 0.77 | 0.74 | <0.001 | <0.001 | 0.004 | — | |
= | Coprococcus | 0.61 | 0.66 | 0.63 | 0.59 | — | — | — | — | |
↑ | Streptococcus | 0.40 | 0.49 | 1.04 | 0.54 | 0.045 | 0.012 | 0.013 | — | |
= | Oscillospira | 0.65 | 0.56 | 0.53 | 0.58 | — | — | — | — | |
↑ | Ruminococcus | 0.54 | 0.58 | 0.59 | 0.56 | — | — | — | — | |
↑ | Bifidobacterium | 0.20 | 0.46 | 1.28 | 0.33 | <0.001 | <0.001 | 0.005 | — | |
↑ | Uncl. Lachnospiraceae | 0.40 | 0.59 | 0.54 | 0.52 | 0.029 | 0.006 | — | — | |
= | Parvimonas | 0.20 | 0.07 | 0.17 | 1.39 | <0.001 | — | — | <0.001 | |
= | Peptoniphilus | 0.35 | 0.15 | 0.13 | 1.09 | — | — | — | — | |
= | Haemophilus | 0.02 | 0.10 | 1.42 | 0.02 | — | — | — | — | |
↑ | Uncl. Coriobacteriaceae | 0.10 | 0.19 | 0.24 | 0.89 | <0.001 | 0.023 | 0.017 | <0.001 | |
= | Akkermansia | 0.30 | 0.39 | 0.35 | 0.32 | — | — | — | — | |
= | Anaerococcus | 0.48 | 0.03 | 0.46 | 0.39 | — | — | — | — | |
↑ | Escherichia | 0.13 | 0.33 | 0.40 | 0.23 | <0.001 | <0.001 | <0.001 | — | |
= | Porphyromonas | 0.25 | 0.05 | 0.01 | 0.73 | — | — | — | — | |
↑ | Ureaplasma | 0.25 | 0.04 | 0.41 | 0.09 | <0.001 | 0.001 | — | 0.005 | |
Genus | ↑ | Peptostreptococcus | 0.03 | <0.01 | 0.08 | 0.63 | 0.018 | — | 0.024 | 0.009 |
↑ | Finegoldia | 0.09 | 0.03 | 0.45 | 0.16 | 0.016 | — | 0.015 | — | |
↑ | Veillonella | 0.08 | 0.07 | 0.46 | 0.08 | 0.038 | — | 0.019 | — | |
↑ | Gemella | 0.05 | 0.03 | 0.32 | 0.27 | <0.001 | — | — | <0.001 | |
↑ | Mobiluncus | 0.03 | 0.08 | 0.02 | 0.49 | 0.013 | — | — | 0.002 | |
↑ | Alloscardovia | <0.01 | 0.06 | 0.57 | <0.01 | 0.002 | 0.041 | <0.001 | — | |
↑ | Uncl. Gemellaceae | 0.01 | 0.03 | 0.49 | <0.01 | 0.019 | — | — | 0.041 | |
= | Uncl. Rs-045 | <0.01 | <0.01 | 0.04 | 0.43 | — | — | — | — |