Table 2 ICE clustering analysis.

From: SMRT sequencing of full-length transcriptome of seagrasses Zostera japonica

Samples

Size

Number of consensus isoforms

Average consensus isoforms read length

Number of polished high-quality isoforms

Number of polished low-quality isoforms

Percent of polished high-quality isoforms (%)

T01

0–1 kb

3,083

915

2,849

227

92.41%

T01

1–2 kb

22,705

1,455

19,704

2,734

86.78%

T01

2–3 kb

14,780

2,335

10,501

3,102

71.05%

T01

3–6 kb

18,571

3,513

12,995

5,542

69.97%

T01

>6 kb

536

9,004

21

459

3.92%

T01

All

59,675

2,353

46,070

12,064

77.20%

  1. Size: insert fragment size of cDNA libraries; Number of consensus isoforms: the number of consensus isoforms obtained from ICE clustering analysis. Average consensus isoforms read length: sequence length of the consensus isoform; Number of polished high-quality isoforms: the number of high-quality transcripts; Number of polished low-quality isoforms: the number of low-quality transcripts; Percent of polished high-quality isoforms (%): percentage of high-quality transcripts in consensus isoform.
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