Figure 2 | Scientific Reports

Figure 2

From: Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations

Figure 2

Crystal structure of the aP1-CTD•aEF1A•GTP•aPelota complex. (A) Overall structure of the GTP-bound complex ApeP1C17•ApeEF1A•GTP•ApePelota. ApeEF1A•ApePelota, ApeP1C17, and GTP are represented by surface, ribbon, and stick models, respectively. Colors in ApeEF1A are as follows, domain 1 (pink), domain 2 (orange) and domain 3 (yellow); ApePelota is blue; aP1 is green. The N- and C-termini of ApeP1C17 are indicated as ‘N’ and ‘C’, respectively. (B) Structural comparison of ApeEF1A•GTP in the complex described here with PhoEF1A•GDP [PDB ID: 3WY9]12 superposing domains 2 and 3. The colors of domains of aEF1A are as in (A), except for domain 1 of PhoEF1A•GDP (grey). (C) Structure of the binding interface between ApeP1C17 and ApeEF1A in the ApeP1C17•ApeEF1A•GTP•ApePelota complex. ApeEF1A and ApeP1C17 are represented by a ribbon model, and the amino acid residues of ApeEF1A and ApeP1C17 that participate in the interaction by stick models. The color coding is the same as in (A). (D) Schematic diagram of the interactions between ApeP1C17 and ApeEF1A. The van der Waals contacts and hydrogen bonds are represented by black and red lines, respectively. Amino acid residues and numbering are for A. pernix samples, and those in parentheses are for P. horikoshii samples.

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