Table 12 MHC-II -peptide docking scores of selected helper T-cell epitopes.

Epitope (Type)	DRB1–0101		DRB1–0301		DRB1–0401		DRB1–1101		DRB1–1501		DRB5–0101		Average
Epitope (Type)	C.D*	I.S*	C.D	I.S	C.D	I.S	C.D	I.S	C.D	I.S	C.D	I.S	C.D	I.S
L1^8–22 (16)	48.841	149	463.013	120	33.772	120	41.410	118	30.990	118	47.773	119	60.966	124
L1^8–22 (18)	57.344	137	45.1999	125	48.297	125	35.110	125	38.195	125	53.419	125	46.261	127
L1^95–111 (16)	24.887	136	11.423	136	40.015	136	12.880	136	22.660	136	53.440	136	27.551	136
L1^95–111 (18)	51.199	136	89.320	136	29.488	136	26.401	136	12.182	136	32.170	136	40.127	136
L1^327–342 (16)	40.692	123	44.417	117	139.393	115	73.978	115	28.265	115	70.108	110	66.142	115.8
L1^324–342 (18)	54.704	123	62.131	117	39.789	114	14.761	114	21.197	114	156.779	110	56.227	115.3
L1^416–430 (16)	47.280	135	166.768	133	55.994	135	12.043	135	13.596	133	40.599	135	56.047	134.3
L1^417–431 (18)	131.173	147	47.635	147	35.827	147	51.537	147	20.434	147	88.819	147	62.571	147
L2^102–120 (16)	43.581	118	34.194	120	46.564	133	19.9137	129	112.397	149	28.873	118	47.588	127.8
L2^100–118 (18)	121.068	146	29.429	130	59.920	128	40.538	128	25.8673	128	41.720	128	53.090	131.3
L2^59–49 (16)	72.663	116	100.837	110	33.013	116	36.984	116	75.634	116	71.575	166	65.117	115
L2^281–297(16)	46.236	139	36.971	139	138.283	139	56.161	139	49.871	139	44.997	139	62.086	139
L2^274–290 (18)	62.014	139	58.308	139	146.188	139	36.501	139	41.267	139	61.209	139	67.581	139

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