Table 2 Genes harboring k-mers significantly associated with different phenotypes (from (1) to (6)) in Hanoi and KwaZulu-Natal studies.
Phenotype | Gene name | Number of genes | |||||
|---|---|---|---|---|---|---|---|
(1) | (2) | (3) | (4) | (5) | (6) | ||
No | Yes | Yes | Yes | Yes | Yes | gid | 1 |
No | Yes | No | Yes | No | Yes | rrs | 1 |
No | Yes | Yes | No | Yes | No | katG | 1 |
No | No | Yes | Yes | Yes | Yes | PPE18, Rv1148c | 2 |
Yes | No | Yes | No | No | No | ephB, glpK, mce1A | 3 |
No | No | Yes | No | No | Yes | emrB, mmpL6, Rv1588c | 3 |
No | No | Yes | Yes | No | Yes | PE_PGRS10, PE_PGRS21, PE_PGRS53, pks12, pncA, rpoB, Rv2090, wag22 | 8 |
No | No | No | Yes | No | Yes | atsD, fabG1, gyrA, helZ, murF, PE_PGRS52, Rv2000, Rv2161c, Rv3471c, ubiA | 10 |
No | No | No | Yes | Yes | Yes | ctpB, drrA, ethA, fhaA, PPE19, PPE60, Rv0094c, Rv1945, Rv2019, Rv2141c, Rv3921c | 11 |
No | Yes | Yes | No | No | No | accD2, eccC3, eccC4, fadE7, fas, glfT1, icd1, lepB, lprN, mbtJ, mce1R, menA, mez, PE_PGRS42, PPE30, PPE4, PPE54, rbsK, Rv1106c, Rv1147, Rv1215c, Rv1747, Rv2005c, Rv2566, Rv3085, Rv3401, Rv3677c, yfiH, zwf1 | 29 |
No | No | No | No | Yes | No | fadD5, Rv0336, Rv0348 | 3 |
Yes | No | No | No | No | No | atsA, gltA2, PE_PGRS12, Rv3863 | 4 |
No | Yes | No | No | No | No | mycP2, rpsL, Rv0012, Rv0219, Rv0893c, Rv1217c, Rv1443c, Rv1515c, Rv1516c, Rv2033c, Rv2277c, Rv2672, Rv2825c, Rv3177, Rv3618, yjcE | 16 |
No | No | No | No | No | Yes | cysK1, espI, glmS, hsaA, lprQ, PE23, pks15, pks7, pmmB, rhlE, Rv0121c, Rv1073, Rv1639c, Rv2219, Rv3217c, Rv3254, Rv3660c, Rv3707c, thiL, vapB34 | 20 |
No | No | Yes | No | No | No | 35kd_ag, accA3, adhE1, aglA, aldA, alkB, alr, amiB2, amiC, aprA, aroA, aroG, arsA, arsB2, bfrA, bfrB, blaC, cdh, cobN, cut1, cyp139, cysA2, cysD, deoC, devS, dinF, dinG, dinX, dnaB, dnaE2, dnaG, dnaK, dxs2, eccA3, eccB2, eccC2, eccD5, efp, egtE, eno, erg3, espH, esxJ, esxK, esxM, etgB, fadB3, fadB4, fadD15, fadD18, fadD22, fadD24, fadE18, fadE25, fadE34, fbiC, fecB, folC, frdD, fusA1, gatB, gcvB, glgA, gnd2, groEL2, guaB1, guaB2, hemB, hemY, hisH, hupB, hycQ, iniC, ispD, kshA, lepA, leuA, lipD, lipP, lppA, lppH, lppZ, lpqH, lprA, ltp1, mbtE, mce3B, mce3C, mcr7, menC, metH, mmpL1, mmpL11, mmpL5, mmsA, mmuM, moeB1, murE, mutT3, mymT, narG, nlhH, nrp, oppB, oxyR, papA2, papA5, PE_PGRS1, PE_PGRS13, PE_PGRS16, PE_PGRS17, PE_PGRS19, PE_PGRS2, PE_PGRS22, PE_PGRS23, PE_PGRS24, PE_PGRS25, PE_PGRS26, PE_PGRS27, PE_PGRS30, PE_PGRS31, PE_PGRS32, PE_PGRS33, PE_PGRS38, PE_PGRS4, PE_PGRS43, PE_PGRS44, PE_PGRS45, PE_PGRS46, PE_PGRS47, PE_PGRS48, PE_PGRS50, PE_PGRS54, PE_PGRS55, PE_PGRS56, PE_PGRS57, PE_PGRS6, PE_PGRS62, PE_PGRS7, PE_PGRS9, PE1, pepC, pepD, pepR, php, pknB, pknJ, pknK, pknL, pks13, pks9, pncB2, pntAb, ppa, PPE11, PPE12, PPE15, PPE21, PPE24, PPE34, PPE42, PPE46, PPE55, PPE56, PPE57, PPE59, PPE6, PPE8, ppm1, ppnK, ppsA, ppsC, proV, prpD, psd, purH, purL, purT, recC, relE, rfe, rimJ, rpfA, rpsD, Rv0057, Rv0060, Rv0074, Rv0095c, Rv0111, Rv0133, Rv0149, Rv0178, Rv0180c, Rv0188, Rv0192, Rv0193c, Rv0203, Rv0218, Rv0238, Rv0257, Rv0278c, Rv0302, Rv0323c, Rv0339c, Rv0367c, Rv0378, Rv0386, Rv0412c, Rv0457c, Rv0474, Rv0477, Rv0492c, Rv0537c, Rv0538, Rv0575c, Rv0584, Rv0647c, Rv0650, Rv0658c, Rv0686, Rv0696, Rv0740, Rv0790c, Rv0842, Rv0845, Rv0874c, Rv0876c, Rv0921, Rv0939, Rv0996, Rv1004c, Rv1024, Rv1043c, Rv1045, Rv1047, Rv1048c, Rv1050, Rv1069c, Rv1085c, Rv1178, Rv1225c, Rv1273c, Rv1313c, Rv1318c, Rv1372, Rv1395, Rv1425, Rv1455, Rv1488, Rv1498A, Rv1499, Rv1526c, Rv1610, Rv1667c, Rv1683, Rv1702c, Rv1707, Rv1714, Rv1725c, Rv1726, Rv1728c, Rv1729c, Rv1739c, Rv1749c, Rv1815, Rv1825, Rv1828, Rv1831, Rv1835c, Rv1879, Rv1895, Rv1941, Rv1999c, Rv2017, Rv2023A, Rv2024c, Rv2025c, Rv2038c, Rv2074, Rv2134c, Rv2143, Rv2164c, Rv2177c, Rv2190c, Rv2219A, Rv2228c, Rv2254c, Rv2256a, Rv2286c, Rv2314c, Rv2319c, Rv2327, Rv2424c, Rv2456c, Rv2532c, Rv2556c, Rv2567, Rv2621c, Rv2630, Rv2638, Rv2656c, Rv2668, Rv2669, Rv2729c, Rv2733c, Rv2792c, Rv2798c, Rv2851c, Rv2864c, Rv2893, Rv2897c, Rv2951c, Rv2974c, Rv2994, Rv3027c, Rv3060c, Rv3064c, Rv3074, Rv3104c, Rv3169, Rv3193c, Rv3201c, Rv3208, Rv3216, Rv3218, Rv3230c, Rv3263, Rv3365c, Rv3400, Rv3439c, Rv3549c, Rv3668c, Rv3689, Rv3717, Rv3728, Rv3729, Rv3807c, Rv3856c, Rv3896c, Rv3898c, sirA, smc, tal, TB9.4, tgs2, thiD, tig, treX, trxB1, uspC, uvrA, vapB36, vapC29, whiA, yrbE3A, yrbE3B | 356 |
