Figure 3
From: Improved 18S and 28S rDNA primer sets for NGS-based parasite detection
Taxonomic classification of eukaryotic reads in the faecal samples of a tapeworm-infected rat (ZR4) at SILVA levels 7 and 10. Circles from the inside show taxonomic distributions using the EMP (1391F/EukBr), 563F/1132R, 616*F/1132R, 1183F/1631R, DM568F/RM2F, RM2F/RM3R, GA12F/RM4R and GA20F/RM9R primer sets, respectively. Only taxa with ≥5% of the total non-bacterial reads are shown in the plots, and taxa with <5% are summarised as ‘Others’. Sequence reads without any taxonomic assignments because of low similarity with the database are shown as ‘Unassigned’.
