Table 1 Summary information of datasets from the TCGA and the 1000 Genome Project that were used in this study.
From: Identification of 12 cancer types through genome deep learning
Cancer type | Samples | SNVs files | Age | Gender | Race | Tumor stage | Vital Status | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
(N) | (N) | (mean ± s.d.) | Male | Female | White | American | Asian | NA | I | II | III | IV | NA | Alive | Deceased | NA | |
(%) | (%) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | (N) | ||||
BLCA | 412 | 425 | 73.1 ± 10.5 | 73.79 | 26.21 | 327 | 23 | 44 | 18 | 2 | 131 | 141 | 136 | 2 | 230 | 182 | 0 |
BRCA | 1044 | 1080 | 67.0 ± 13.1 | 1.05 | 98.95 | 719 | 180 | 59 | 86 | 173 | 588 | 241 | 20 | 22 | 898 | 146 | 0 |
COAD | 433 | 493 | 74.5 ± 13.6 | 51.97 | 48.03 | 212 | 59 | 11 | 151 | 90 | 166 | 118 | 46 | 13 | 332 | 99 | 2 |
GBM | 396 | 498 | 63.1 ± 13.2 | 63.36 | 36.64 | 337 | 41 | 6 | 12 | 0 | 0 | 0 | 0 | 396 | 88 | 303 | 5 |
KIRC | 339 | 376 | 69.1 ± 12.0 | 64.60 | 35.40 | 275 | 52 | 6 | 6 | 193 | 33 | 2 | 69 | 42 | 258 | 81 | 0 |
LGG | 513 | 530 | 49.6 ± 12.8 | 55.27 | 44.73 | 472 | 22 | 8 | 11 | 0 | 0 | 0 | 0 | 513 | 386 | 126 | 1 |
LUSC | 497 | 561 | 73.4 ± 9.1 | 73.84 | 26.16 | 348 | 30 | 9 | 110 | 242 | 160 | 84 | 7 | 4 | 279 | 218 | 0 |
OV | 443 | 610 | 66.6 ± 11.7 | 0 | 100 | 376 | 31 | 14 | 22 | 0 | 0 | 0 | 0 | 443 | 188 | 253 | 2 |
PRAD | 498 | 503 | 69.0 ± 7.1 | 100 | 0 | 147 | 7 | 2 | 342 | 0 | 0 | 0 | 0 | 498 | 488 | 10 | 0 |
SKCM | 470 | 472 | 66.1 ± 14.9 | 61.70 | 38.30 | 447 | 1 | 12 | 10 | 77 | 140 | 185 | 23 | 45 | 249 | 221 | 0 |
THCA | 496 | 504 | 55.5 ± 15.5 | 26.41 | 73.59 | 325 | 27 | 51 | 93 | 331 | 51 | 110 | 2 | 2 | 482 | 14 | 0 |
UCEC | 542 | 561 | 72.2 ± 11.2 | 0 | 100 | 371 | 119 | 20 | 32 | 0 | 0 | 0 | 0 | 542 | 451 | 91 | 0 |
IGSR | 1991 | 1991 | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | ∼ | |
