Table 3 Number of eQTLs detected in a genome-wide scan.

Region	Transcript-only			Exon-only			Both
Region	cis	trans	total	cis	trans	Total	cis	trans	total
CRBL	77	132	209	1479	578	2057	390	64	454
FCTX	50	12	62	519	441	960	126	26	152
HIPP	46	30	76	522	518	1040	94	28	122
MEDU	36	24	60	424	161	585	84	14	98
OCTX	37	32	69	377	267	644	100	10	110
PUTM	29	26	55	166	353	519	42	20	62
SNIG	27	36	63	88	110	198	22	20	42
TCTX	71	47	118	530	398	928	136	14	150
THAL	31	36	67	280	188	468	62	20	82
WHMT	42	28	70	1091	262	1353	234	18	252
Total	446	403	849	5476	3276	8752	1290	234	1524

The number of eQTLs are grouped into transcript-only, exon-only and both and further classified by cis-acting and trans-acting. “Transcript-only” are eQTLs found only at the transcript-level. “Exon-only” are eQTLs found only at the exon-level. “Both” are eQTLs found at both the transcript-level and at the exon-level within the transcript. Due to these definitions, the numbers under the “Both” column include both transcript-level and exon-level eQTLs. There may also be overlapping numbers of eQTLs between the regions as some eQTLs may have been detected in several regions.

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