Table 1 Summary of 10 disorders with established high reliable causative variants.

From: Diagnostic and clinical utility of whole genome sequencing in a cohort of undiagnosed Chinese families with rare diseases

Family

Initial Diagnosis

Final Diagnosis

Gene

Chr.

Position (−)

Position (+)

Ref./Mut.

Mutation Type

Inheritance Mode

5-1

46,XY sex reversal

Disorder of Sex Development

NR5A1

9

127265357

127265357

C/T

splicing

AD

10-1

Bardet-Biedl Syndrome

Bardet-Biedl Syndrome

TTC8(BBS8)

14

89327564

89327564

A/G

splicing

AR

10-2

No diagnosis

3p Deletion Syndrome

CNV

3

0

10349999

CNV(loss)

De novo

13

No diagnosis

(exclued the Anhidrotic Ectodermal Dysplasia)

Anhidrotic Ectodermal Dysplasia

EDA

X

69176954

69176954

A/C

missense

XLR

21

Membranoproliferative Glomerulonephritis

Congenital Nephrotic Syndrome

UPK3A

22

45683310

45683311

CT/-

frameshift_deletion

CHT

    

22

45684998

45684998

G/A

nonsense

22-1

Peutz-Jeghers syndrome

Peutz-Jeghers syndrome

STK11

19

1219406

1219406

C/A

missense

AD

22-2

Adenomatous Polyposis Coli

Adenomatous Polyposis Coli

APC

5

112128143

112128143

C/T

nonsense

AD

24

Mental Retadation with Seizures

Guanidinoacetate methyltransferase deficiency

GAMT

19

1399922

1399922

T/G

missense

AR

28

Retinitis Pigmentosa

Choroideremia

CHM

X

85213886

85213886

G/A

nonsense

XLR

32

No diagnosis

Machado-Joseph Disease

ATXN3

14

92537362

92537378

SSR

AD

  1. Note: Ref. = reference allele; Mut. = mutation allele; AD = autosomal dominant; AR = autosomal recessive; CHT = compound heterozygous; XLR = X-linked recessive.